Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02113 ATGACTGAACTCCGAAGCGGAAGAAACCGGGAAACTGTCCATGACCCAAACCCAAACCCAAACCCGAACACAAAAGCCCGCCAGAGAAGAACGAGAAGAACCGCTGTCAACCCCGAGAGGTACAATCGCAACACACTCGAGCGTTGTAGAATCGGTAACCGTGAGTTAGGAGAGAAGGAGCAACAACAGCAACACGCGCCTCTGCTTAGGGTTTCAGAAGAAGGTAAAGAGAAAGATATGGATGACGAGTTCGATAGCGGCGGTGGCCGGAGCCCCGAGAAGGCTGCGCCCGCCGAAGACGAAGGAAGCACTGCTCCCATTCCCGAGAGGGTACAGGTAGGTGGTTCTCCGTTGTACAAATTAGACAGAAAACTTGGGAAGGGAGGGTTTGGACAAGTTTACGTAGGTAGGCGAGTTGGGGCTGGTGCCGGAGCGTTAGAGGTACGTGCAGATAAGTGGTATGCATTGGGTGGTAGTCATGGTGTTCCACGTGTTCATTACAAGGGACGGCAAGGTGATTACTATGTTATGGTCATGGATATGCTTGGCCCTAGTCTGTGGGATGTCTGGAATAACAACTCAAACACAATGTCTGCGGAAATGGTGGCATGTATAGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAAAGGGTATGTGCACGGTGATGTAAAACCTGAGAATTTTTTGCTTGGCACCCCTGGAACTGCTGATGAGAAAAAGCTTTTCCTAGTTGATCTTGGTTTAGCAACCCGTTGGCGTGATAGTTCAACTGGCTTTCATGTTGAGTATGATCAACGTCCTGATGTATTTAGAGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGAAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACATTGATTTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTGTGCAAGAAAAAGATGGCAACCTCACCAGAAACTTTGTGTTGTGTCTGTCCTCCACCTTTCCGGCAGTTTGTGGAATACGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCTAAGTATATATCACTTTTTGATGGAATTGTTGGACCGAATCCAGATATCAGACCCATAAATACCGAAGGTGCACAAAAGCTTATATATCTGGTTGGACATAAGAGAGGACGATTAACTGTGGAAGAAGATGATGACGAACAACCGAAGAAGAGAGTAAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGCGCGGCTGTCCCAACACATTGAAAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTATGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCTCAAGTTCATGAACTCTCACCCCACTTTCTTCATAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATCAGTGCAATAGCAGGATCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATACATGCAGCAATCCTATAAAGTCAGCGAGTCATTTCCATTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTCTGTCACTTCTATGGCTACTGCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATATTCAGACCAGGTTGTGGAACTTGATTTCTTGTATCCTAGTGAGGGCATTCATCGCAGGTGGGACAATGGTTACCGCATCACTTCAACTGCTGCCACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCGACTGATGAAACTCAAGAGACACTCCGCACATCTGCCTTTCCTAGTAGTCACGTCAAGGAAAAATGGTCTAAAAATCTCTATATTGCATCAATATGCCATGGGAGAACAGTTTCATGA 1986 0.4522 MTELRSGRNRETVHDPNPNPNPNTKARQRRTRRTAVNPERYNRNTLERCRIGNRELGEKEQQQQHAPLLRVSEEGKEKDMDDEFDSGGGRSPEKAAPAEDEGSTAPIPERVQVGGSPLYKLDRKLGKGGFGQVYVGRRVGAGAGALEVRADKWYALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTADEKKLFLVDLGLATRWRDSSTGFHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIYLVGHKRGRLTVEEDDDEQPKKRVRMGMPAMQWISVYNARRPMKQRYHYNVADARLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPHFLHKEWIMEQWENNYYISAIAGSNNGSSLVVMSKGTQYMQQSYKVSESFPFKWINKKWREGFSVTSMATAGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSSHVKEKWSKNLYIASICHGRTVS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02113 661 PANTHER CASEIN KINASE-RELATED 114 631 - -
Vimu1g02113 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Vimu1g02113 661 CDD STKc_CK1 119 370 - -
Vimu1g02113 661 MobiDBLite consensus disorder prediction 70 97 - -
Vimu1g02113 661 SUPERFAMILY Protein kinase-like (PK-like) 119 374 IPR011009 -
Vimu1g02113 661 MobiDBLite consensus disorder prediction 32 61 - -
Vimu1g02113 661 Gene3D Transferase(Phosphotransferase) domain 1 93 386 - -
Vimu1g02113 661 Pfam Protein kinase domain 171 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02113 661 MobiDBLite consensus disorder prediction 1 114 - -
Vimu1g02113 661 ProSiteProfiles Protein kinase domain profile. 119 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02113 661 SMART serkin_6 119 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02113 Vimu-Chr1 30061508 30068371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02113 213 370 MAP Kinase Kinase Kinase AT5G50180 26.875 3.54e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vimu1g02113 Pkinase 4.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02113 - - pop:7476691 1082.01