Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02112 ATGTACAAAAGCTACATAGATGAGGGTCCAATCTGTTGCAATCAAAAGGCTCAAACCTGGTTCTCAACAAGTTATGCAGGAGTTCATGAACGAAATCGAAATGTTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCTGTGCCAGATCTGCATAGGTGTCACAGGAGGGCTCCACTATCTGCATACAAGTGGAAAGCACGTCATCATTCACCGTGATGTAAAGATTACCAACATTTTATTGGATGAAAAATTGGTGGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCATGAGTTCTTCAATGGCCCATGTGAGTAATCAAAAGGGACAAACCAGTGGAGAATTGAACCCACGAGTTCTTCAGGAAAATGGAAGAAGAAAGGGACAAACCGGTGGAGAATCGAAAGGGTGA 423 0.435 MYKSYIDEGPICCNQKAQTWFSTSYAGVHERNRNVLSTSSSPSCFPHLCQICIGVTGGLHYLHTSGKHVIIHRDVKITNILLDEKLVAKVSDFGLSRIGPMSSSMAHVSNQKGQTSGELNPRVLQENGRRKGQTGGESKG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02112 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Vimu1g02112 140 MobiDBLite consensus disorder prediction 100 140 - -
Vimu1g02112 140 Coils Coil 139 140 - -
Vimu1g02112 140 Gene3D Transferase(Phosphotransferase) domain 1 14 134 - -
Vimu1g02112 140 PANTHER OS07G0166700 PROTEIN 44 126 IPR045272 GO:0004714|GO:0006468
Vimu1g02112 140 Pfam Protein kinase domain 47 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02112 140 SUPERFAMILY Protein kinase-like (PK-like) 45 106 IPR011009 -
Vimu1g02112 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02112 140 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02112 Vimu-Chr1 30014568 30014990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02112 39 121 Receptor kinase-like Gene Family AT5G38990 57.831 5.82e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu1g02112 Pkinase 3.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02112 - - gmx:100781248 111.694