Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02111 TTGGAAATCACCACGCATTCTTCATCCATTTCTTCACCCCAATGCTCTCGCCTCAATTCCAATCCATGTTTTTCGCGGCGGCGTCGTGGAGGAAATTCTGCTGTCGGGAAAATCGAGGGCCAAGACGAAGCTCTGCAATATTGTTTGGCTCTGCAAAGTACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATAAAGTCTGTGAACGTTCTCATCGACCGCAGCTACAATGCAAGATTGAGGGATTTTGGTTTGGCCTTGAGAGGCCATGTTGATGACTACAGACTCATGTGCACTCCCCCTACAGGCATCATGGGCTATCTTGATCCTTGTTATGTAACTCCTGATAATTTGAGCACAAAAACTGATGTTTTCAGCTTTGGGATTTTGTTGCTGGAGATTATAAGCAGAAGGAAGGCCATTAACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCCAAGGATCCGGTTATGAGGAAGCAGTTGGCTATGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAAGGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAGTGGTTTTAACAACCCTTGCATGATGGTTGAGATTGTGGGACGCCCCGTCGAAGCAAGAAATGGTGAATTCAATTCTAGACTGGCAGGCTTGGAAGAGGGAAATATTGAAGCTTTAGATGGAAGACTTTCCAAATCTGCAATGAGGGAATGTGTTGACGGCAAGCACACACATTATAACTGTGGTGGTAGGGGCAGGGGTGCTGGCTCTGGCATGGGCCATGGCACAACTAGGATGGATAGCTGGCATAGGAAATATCCAGACCCTGTCACTGGCCAGAGAAATTATACTTATATGCAGGCTGTCAAGGCTTACTTAGGTGGAAGAATGTATGTGCTTTGTGGACTGGTTCAATATACCAAGCTCGCTGGGATCACGGTGGGCTACACAATAACTTCTTCCACAAGCTTGATTCCAAACTTTAACGAGCTTACATGGCTCTCAACTGCTGCTGCCATCACCTCTTTTGGTTATGTATTCATTGGTAGTGGGCTATGTCTATCGGTCGTCCTCTCAGAGTTCTTCAAAGAACCTCGGTTGCTCGGTCCAATCGTAACAGGTCGATCAAGAAAGAGTTCACCCAAGTTAGTCAAGGAAGAGTTCACCCAAGTAAACCCTTGTCGCAACTCCAACAAGTCAGTCAAGGAAGAGTTCATTCAAGTGAATCCCTGCCGATCTAATGTCGAGTTGGACACAAAAGAATTCTGCAAAGAACCCCGACCGCTTAGTCCAATCGCAACAAGTCGGTCAAGGAAAAGTTCACCCAAAGATCGAACAACTGTGGATAAGGGTGTCTGGCAAACCTACACTAGTTGCGGCACCAACTTGGGCCCATTGTTAGGTGGTCAGCTTGCTGAACTCATCAGTCTTCTGCGAAAAGGAGCTGCAACCAGCATAACCGGAACCAAACTACCCGTAGAAGATAAACTTTTGAAGGTCTTCACTGCAATGGGAAACATAGCTCTTGCGTGCACTTACGCTACTGTCATTTATGATATTATGGACACATTAAAGTCACATCCAGCAGAAAATAAGCAAATGAAAAGGGCCAACGTGCTAGGGGTGACAGCAATGACAATATTGTTCTTGCTGTGCAGTGGCCTTGGCTATGCTGCTTTTGGGGACAACACTCCTGGGAACATCTTGACCGGATTTACCGATCCCTTCTGGTTGGTCGCACTGGGGAACGGATGCATCGTAATGCACATGATTGGAGCATATCAGGTGATGGGTCAACCATTCTTTCGTATAGTTGAAATGGGTGCCAACATGGTGTGGCCAGATTCAGATTTCATAAACAAGGAATATTCATTCATGATGGGTAATGTAATGGTTCGTTTCAACTTGTTTAGTGAGGTTCTTTCCCTCCTTGGTGCAATTGGATTCGGGCCTTTAGTAGTCTTTTTTCCCATACAAATGCACATTGCCCAGAAACAGATTAGAAAACTATCACTCAGGTGCCTAACCGAGATTAATGAGGCAAACAATGGTCATAACGTAAACAACCTCATGCAAATCGAGTCTAAATTTGGCCGAATCGAGTTATGTCTATGTCAAGTTGAGTCAAGTTATATTTGCATAAGACTAAGTTTAGGTAAACCCACGTTAGGAAAAGTTGGGTTGGAGTCATTTCAAGGTAATCGAGTAGGGTTGACCTTGGATCAAGCTAAAGTTGGATCCACATTGGGTCGAATGAAGTCATACTCACAGAAGTTGAGTCAAGTCAAACCACGACAAGTTGAATCAAGTAGGGAAAACCTTTGA 2448 0.4534 MEITTHSSSISSPQCSRLNSNPCFSRRRRGGNSAVGKIEGQDEALQYCLALQSTAKAIDTLHSSTPPVIHRDIKSVNVLIDRSYNARLRDFGLALRGHVDDYRLMCTPPTGIMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISRRKAINITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVMRKQLAMIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWSGFNNPCMMVEIVGRPVEARNGEFNSRLAGLEEGNIEALDGRLSKSAMRECVDGKHTHYNCGGRGRGAGSGMGHGTTRMDSWHRKYPDPVTGQRNYTYMQAVKAYLGGRMYVLCGLVQYTKLAGITVGYTITSSTSLIPNFNELTWLSTAAAITSFGYVFIGSGLCLSVVLSEFFKEPRLLGPIVTGRSRKSSPKLVKEEFTQVNPCRNSNKSVKEEFIQVNPCRSNVELDTKEFCKEPRPLSPIATSRSRKSSPKDRTTVDKGVWQTYTSCGTNLGPLLGGQLAELISLLRKGAATSITGTKLPVEDKLLKVFTAMGNIALACTYATVIYDIMDTLKSHPAENKQMKRANVLGVTAMTILFLLCSGLGYAAFGDNTPGNILTGFTDPFWLVALGNGCIVMHMIGAYQVMGQPFFRIVEMGANMVWPDSDFINKEYSFMMGNVMVRFNLFSEVLSLLGAIGFGPLVVFFPIQMHIAQKQIRKLSLRCLTEINEANNGHNVNNLMQIESKFGRIELCLCQVESSYICIRLSLGKPTLGKVGLESFQGNRVGLTLDQAKVGSTLGRMKSYSQKLSQVKPRQVESSRENL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02111 815 MobiDBLite consensus disorder prediction 1 24 - -
Vimu1g02111 815 Gene3D Transferase(Phosphotransferase) domain 1 41 223 - -
Vimu1g02111 815 PANTHER OS05G0424000 PROTEIN-RELATED 316 713 - -
Vimu1g02111 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Vimu1g02111 815 MobiDBLite consensus disorder prediction 468 487 - -
Vimu1g02111 815 Pfam Protein kinase domain 51 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02111 815 Pfam Transmembrane amino acid transporter protein 536 714 IPR013057 -
Vimu1g02111 815 Pfam Transmembrane amino acid transporter protein 311 365 IPR013057 -
Vimu1g02111 815 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02111 815 SUPERFAMILY Protein kinase-like (PK-like) 50 227 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02111 Vimu-Chr1 29982574 29995943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02111 525 716 Organic Solute Cotransporters AT1G10010 43.439 6.39e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu1g02111 Aa_trans 6.9e-28 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02111 - - vum:124832395 433.721