Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02109 ATGGGTCGTCGTCTATCAGAGTCGAATTTGGTTCAAGAACTGGTTCTGTACGCAGCTAGCGCAGCACTGAGTTGCTTGGTCTTGTGTATTGGTATCCGACAACTCGACCCGAATCGCGAGGCTTCCAAAAAGGCCCTTCACAACAAAAAGGAGATAGCCAAACGCCTTGGTCGTCCTCTTGTTAACACAAACCCTTACGAGGATGTCATAGCATGCGATGTTATCAATCCTGACCACATTAATGTGGAGTTTAACTCAATCGGAGGACTGAAAACTACAAAACAAGCCCTATATGAACTTGTTATTCTGCCTCTAAGAAGACCTGACCTATTTTCTCATGGTAAACTTCTTGGGCCACAAAAGGGTGTCCTTCTGTATGGACCCCCTGGCACGGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATCAATGTTAGGATATCAAGCCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGGGGCTATTGATGGGCCTCAATCTCCATTGAAACAATACTATGGGAGAAGAGCAGATAGGGGTACAATGGAAATGGCTGCCATATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTCGACAGCTTTTTGGGTCAGCGTCGTCAAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGTTTTACTACTGATAAGAATGCTCAAGTTATGGTCCTTGCTGCTACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGACGACTTCCTCAAGCATTTGAAATTGGTATTCCGGACAAAAAGGAGAGGGCTGACATATTGAATGTTATCTTGAAGGGTGAGAGGATTGAAGAAAACATTGACTTTGACCATATAGCTTTCTTATGTGAGGGTTACACTGGTTCGGATCTATTTGACCTGTGCAAGAAAGCTGCATATTTTCCAATTAGAGAACTTCTGGATGAAGAGAAGAAAGGGAGAACTGTTTCTGCTCCTAGACCATTGTCCCAAGTAGACTTGCAGAAGGCCCTGGCCACATCACGAAAGACTACTGATGCTGCATCTGAATACAACGGATTAAGTGCTGATACTCTAAGATGGGCAAGGCAGAGGGAACCTGGTGGTGATTATCAGGTTCAAGCTGCCATTAATGAACTCTCTAAGTTTGTGGTATCTCACATGGCTAGTCGCCAGCCAGATGCTAAAGATGTTTAA 1254 0.4426 MGRRLSESNLVQELVLYAASAALSCLVLCIGIRQLDPNREASKKALHNKKEIAKRLGRPLVNTNPYEDVIACDVINPDHINVEFNSIGGLKTTKQALYELVILPLRRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISSLMSKWFGDAQKLGAIDGPQSPLKQYYGRRADRGTMEMAAIFSLAHKLQPAIIFIDEVDSFLGQRRQTDHEALLNMKTEFMALWDGFTTDKNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDKKERADILNVILKGERIEENIDFDHIAFLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRTVSAPRPLSQVDLQKALATSRKTTDAASEYNGLSADTLRWARQREPGGDYQVQAAINELSKFVVSHMASRQPDAKDV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02109 417 Gene3D - 81 366 IPR027417 -
Vimu1g02109 417 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vimu1g02109 417 ProSitePatterns AAA-protein family signature. 249 268 IPR003960 GO:0005524|GO:0016887
Vimu1g02109 417 Pfam ATPase family associated with various cellular activities (AAA) 123 276 IPR003959 GO:0005524|GO:0016887
Vimu1g02109 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 338 IPR027417 -
Vimu1g02109 417 Pfam AAA+ lid domain 299 335 IPR041569 -
Vimu1g02109 417 SMART AAA_5 119 279 IPR003593 GO:0016887
Vimu1g02109 417 Gene3D - 278 358 - -
Vimu1g02109 417 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 10 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02109 Vimu-Chr1 29960646 29968223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02109 82 337 Calmodulin-binding Proteins AT3G56690 30.153 4.86e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02109 K22530 - gmx:100791694 660.988