Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02108 ATGTCAGGCGCAACATGTGAAGTGATGCAAAACGGCAACACCAATTGTTTCGCCAGGTTAGTTTCATTGGTCGTCCAGAACTTGATGGGGAGAAAAGGAAGCAGCTGGTTCTCGTCCGTGAAGAAAGTTTTCAAGTCATCTTCTAAAGACTTGCCGGGGCCTGAGAAGAAGAAAGATAGCACACAGAAATTATTACAGCATGAAGTGGCAGAGGTGGTTTCTTTTGAGCATTTCCCAGTAGAGAGTTCTCCTGATAATAATGTGACAAATGAAGAGAGTGGCACTTCAACTCCATTTACAGAAGATAGAAGCCACGCCATTGCCGTTGCAGCAGCAACTGCCGCCGCTGCTGAAGCTGCCGTGGCGGCTGCTCAAGCAGCTGCAAGAGTGGTGAGATTGGCGGGTTATGGACGCCACTCCAAGGAAGAAAGAGCAGCAATACTCATTCAATCATACTACAGAGGCTATCTAGCTCGACGAGCACTGCGAGCACTGAAGGGATTGGTGAGGCTGCAAGCACTGGTGAGGGGACACAATGTGAGAAAGCAAGCCCAAATGACGATGCGATGCATGCAAGCACTGGTGAGGGTGCAGGCCCGAGTAAGGGCTCGCCGACTCCAATTGAGTCACGTCGACGACGAAAGACAACACTATGAGAAGATGGAAGAGCCCAAGCCCAAACCCATGCCCATGAGCCCCATTAGAAGGACACCCATCAATAATGATTGGGACAATAGGCGTCAAAGTAGCTACAAAATTAAGGAAAACGATTTGAGGAAACATGAGGCTGCAATGAAGAGGGAGAGAGCTCTCGCATACGCTTTCAACTTTCAACAGCAAGAGCAGCAAAAACAATATTTACTGGCTGAATCGAAGGGTAAGGATGATATAGAAATAAAGGAAAAAGGGCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCACAACCATACAATGTGAGGAACATGGGACCACGTGAGACCTCTTACATTACTCCTGCTTCTACAACGTCAACCACCACAGATAACATGTCTGAGAAGACCGTGGAAATGGATATGATTGCAACTCCAGGCCCAACCAATGTCAGAAGCCTCAGTCCCATAAACCCAGACTTTATTGATTCAAGCCCACTCTCCCATAGGCACAATCATCACATACCTCCCAGCCCAAATAGACGCTATATGGCCCCAACTCAGTCTGCAAAAGCTAAGGTTCGGGTTCAAGGCCCATCTAAACCTCGGGTTTCAACTGGGCCTCACTGGAACTCCTCAACTAAGGGAGGATCTACCTGCGACTCGTCCAGTTCAGGTGGAGGAATCACCGCTTACCAAATTCCAAGAAGTCCAGGCCCAAAAATTAATGGCATTCGTTCACAGTCCAGAAGGACTGTTGGTAGCAGTCCAGATTATATTGAGGATTGGGCACTTCCTCTTGGAGCCCATGGTTGGACTTAA 1458 0.4829 MSGATCEVMQNGNTNCFARLVSLVVQNLMGRKGSSWFSSVKKVFKSSSKDLPGPEKKKDSTQKLLQHEVAEVVSFEHFPVESSPDNNVTNEESGTSTPFTEDRSHAIAVAAATAAAAEAAVAAAQAAARVVRLAGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHVDDERQHYEKMEEPKPKPMPMSPIRRTPINNDWDNRRQSSYKIKENDLRKHEAAMKRERALAYAFNFQQQEQQKQYLLAESKGKDDIEIKEKGQWGWNWLERWMSSQPYNVRNMGPRETSYITPASTTSTTTDNMSEKTVEMDMIATPGPTNVRSLSPINPDFIDSSPLSHRHNHHIPPSPNRRYMAPTQSAKAKVRVQGPSKPRVSTGPHWNSSTKGGSTCDSSSSGGGITAYQIPRSPGPKINGIRSQSRRTVGSSPDYIEDWALPLGAHGWT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02108 485 Gene3D - 139 193 - -
Vimu1g02108 485 PANTHER IQ-DOMAIN 5-RELATED 29 431 - -
Vimu1g02108 485 MobiDBLite consensus disorder prediction 416 443 - -
Vimu1g02108 485 Pfam Protein of unknown function (DUF4005) 378 420 IPR025064 -
Vimu1g02108 485 Coils Coil 251 271 - -
Vimu1g02108 485 MobiDBLite consensus disorder prediction 213 244 - -
Vimu1g02108 485 Pfam IQ calmodulin-binding motif 169 184 IPR000048 GO:0005515
Vimu1g02108 485 Pfam IQ calmodulin-binding motif 143 163 IPR000048 GO:0005515
Vimu1g02108 485 MobiDBLite consensus disorder prediction 406 470 - -
Vimu1g02108 485 ProSiteProfiles IQ motif profile. 142 170 IPR000048 GO:0005515
Vimu1g02108 485 SMART iq_5 164 185 IPR000048 GO:0005515
Vimu1g02108 485 SMART iq_5 141 163 IPR000048 GO:0005515
Vimu1g02108 485 MobiDBLite consensus disorder prediction 80 100 - -
Vimu1g02108 485 ProSiteProfiles IQ motif profile. 166 193 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02108 Vimu-Chr1 29943559 29948480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02108 29 453 IQD Protein Family AT3G49260 49.890 2.44e-100 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02108 - - gmx:100798026 590.112