Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02106 ATGCAGGAGATCAGTACCTTCGACCTTATCAGCAAGGATGAATTTGTGATACTAGCAAGTGATGGATTGTGGGATGTTATGTCGAGTGAAGTTGCGTGCCAAGTTGTAAGGAAATGCCTGAATGGACAGATTAGGAGAGTGTGCAATGGAGTTGGGAACCATGAAAACCGAGCTGCCGAGGCTGCAAGCCTCTTGGCTGAGATAGCATTGGCAAAGGGAAGTAAAGATAACACCAGTGTCATTGTAGTTGAGCTAAGAGGAACAGTCGGCCATCCTCAATGCCACGAGAGATTATCTACTACCACATAA 309 0.4595 MQEISTFDLISKDEFVILASDGLWDVMSSEVACQVVRKCLNGQIRRVCNGVGNHENRAAEAASLLAEIALAKGSKDNTSVIVVELRGTVGHPQCHERLSTTT 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02106 102 ProSiteProfiles PPM-type phosphatase domain profile. 1 85 IPR001932 -
Vimu1g02106 102 SUPERFAMILY PP2C-like 4 86 IPR036457 -
Vimu1g02106 102 Pfam Protein phosphatase 2C 4 78 IPR001932 -
Vimu1g02106 102 PANTHER PROTEIN PHOSPHATASE 3 85 IPR015655 GO:0004722|GO:0006470
Vimu1g02106 102 Gene3D - 1 89 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02106 Vimu-Chr1 29926137 29926567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02106 13 86 PP2C-type Phosphatase Gene Family AT2G29380 52.000 9.23e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02106 K14497 - gmx:100818568 139.813