Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02105 ATGAAGAAGCCAAAACACCACTTGCCGTCGGCCAACGCTCACCGGCGAGTGGACCCTGATTCCGGTGAGTTTCTCGCCAAGATAAAGAACGGTCGCCAGAGACGGCTCAAAATCAAGCAAATGAAGTACACTTGCCAGGCGAAGATCCGCATCAGGAATGGAACCGTCAGCGTCTCGCCGCCGCCGTCGGAGGACCTGGAGGGAGGGAGCAGAGAGATTCATGAGCACGTGGAGATATCTTTGTCGCTGGCGGCGGCGTCGTCGTCCTCGGAGGAGGAGGAGCGCTCATCGTCGGAGAAAAACGACGGTGTTTTGTCGTACGGGTCAACGTCTGTGATTGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGCGGAGATAGGGTTTGCTGCGAAGGAGAGAGGGAAGTACGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGGGCAGGTGGCGGAGGCGTGTCGCGAGCGGTTGCACCGGCTGGTTGCGGAGGAAGTGGAGAGGAGTGAGAGTCACGTGGAATGGGACTGGCAGGAAGTGATGGAAGGGTGTTTCCGTAAAATGGACAGCGAGGTCGCCGGTAATGCGGCCGTCAGGACTGTGGGTTCCACGGCGGTTGTAGCTGTGATCGCGGCGGAGGAGCTTGTCGTCGCTAATTGCGGTGATTGTAGGGCTGTGTTGGGAAGAGGAGGTGAGGCCGTCGACTTGTCTAGTGATCATAAGCCCGATAGACCAGACGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCTACTTCAAGATCCATAGCTCTTAGCGATGTTGCTTCGGGGCCGTCTGGATTATCCTTGTGGTTTGGCATTTTTTTGACACAACGTTTTTATCTGATCAGCATTGAAAAGACAGAAGAATCTTGGCTCCCTCTGGCTTTTTATTATCAGTGTCGTGAGTATGGCAGAGCAACGTTGACCAAAATGAGTATTATTATTATTATTATCGGCTTTCTCTGA 1032 0.5455 MKKPKHHLPSANAHRRVDPDSGEFLAKIKNGRQRRLKIKQMKYTCQAKIRIRNGTVSVSPPPSEDLEGGSREIHEHVEISLSLAAASSSSEEEERSSSEKNDGVLSYGSTSVIGSRKEMEDAVSAEIGFAAKERGKYDFFAVYDGHGGGQVAEACRERLHRLVAEEVERSESHVEWDWQEVMEGCFRKMDSEVAGNAAVRTVGSTAVVAVIAAEELVVANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIALSDVASGPSGLSLWFGIFLTQRFYLISIEKTEESWLPLAFYYQCREYGRATLTKMSIIIIIIGFL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02105 343 Pfam Protein phosphatase 2C 107 278 IPR001932 -
Vimu1g02105 343 Gene3D - 73 305 IPR036457 -
Vimu1g02105 343 SMART PP2C_4 95 338 IPR001932 -
Vimu1g02105 343 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g02105 343 SUPERFAMILY PP2C-like 103 282 IPR036457 -
Vimu1g02105 343 ProSiteProfiles PPM-type phosphatase domain profile. 106 340 IPR001932 -
Vimu1g02105 343 PANTHER PROTEIN PHOSPHATASE 90 277 IPR015655 GO:0004722|GO:0006470
Vimu1g02105 343 MobiDBLite consensus disorder prediction 83 106 - -
Vimu1g02105 343 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Vimu1g02105 343 CDD PP2Cc 106 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02105 Vimu-Chr1 29924079 29925660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02105 104 277 PP2C-type Phosphatase Gene Family AT3G11410 50.254 1.77e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02105 K14497 - gmx:100807235 402.519