Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02101 ATGTTGCACCATTTTAAAAAGAAAGAAGAAGACCAAGCTAGAGTGGATAAGTTTCTAGAGGATTACAGAGCAGACAAGCCAGCAAGATTTACCTATGCTGATATAAAAAGAATCACGGGTGGTTTTAAAGAAAAGTTAGGGGAAGGAGCTCATGGAGCTGTGTTTAGAGGAAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATCCTCAATAATACGGAGGGAGACGGGAACGATTTCATCAATGAAGTTGGAATTATGGGAAAAATTCACCACATCAACGTGGTTCGTTTGCTTGGTTTTTGTGCTGAGGGACTCCATCGTGCTCTTGTCTACAATTTGTTTCCAAACGGTTCGCTACAGAGTTTCATATTTCCACCGGATGATAAGGACCATTTTCTTGGCTGGGAGAAGCTGCAACACATTGCTCATGGCATTGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTGATCGTCCCATTATTCACTTTGACATCAACCCTCACAATGTGTTACTCGATGAAAACTTCATCCCGAAAATTTCTGACTTTGGCTTAGCCAAATTGTGTTCAAAGAATCCTAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCCCCAGAAGTTTTCTCCAGAAACTTTGGAAATGTGTCTTATAAATCCGATATCTACAGTTATGGAATGTTGTTGTTGGAAATGGTTGGAGGAAGGAAGAATGTGGACATATCTTCAGAACAAAATTTTAATGTTCTGTACCCGGATTGGATCCATAACCTGGTTGATGGAGATATCCATATCCATGTTGAGGATGAAGGTGAAGTTAAAATTGCAAAGAAACTGGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACAGACCATCCATAAAATCTGTCATACAAATGTTAGAAAGTGCAGAGGAAAACCAGTTAACTGTTCCTCCTAACCCATTTCACTCAACGTCCTCCACTTCTACTGGTAGACTCATTTCAACAAGACGTCCTATGGAGTTGGATGTGATTCAAGAATGA 1050 0.4095 MLHHFKKKEEDQARVDKFLEDYRADKPARFTYADIKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGDGNDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNLFPNGSLQSFIFPPDDKDHFLGWEKLQHIAHGIAKGIEYLHQGCDRPIIHFDINPHNVLLDENFIPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDISSEQNFNVLYPDWIHNLVDGDIHIHVEDEGEVKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLESAEENQLTVPPNPFHSTSSTSTGRLISTRRPMELDVIQE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02101 349 FunFam S-receptor-like serine/threonine-protein kinase 6 114 - -
Vimu1g02101 349 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 328 IPR045874 GO:0004672
Vimu1g02101 349 ProSiteProfiles Protein kinase domain profile. 40 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02101 349 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Vimu1g02101 349 FunFam PR5-like receptor kinase 115 321 - -
Vimu1g02101 349 Gene3D Phosphorylase Kinase; domain 1 13 114 - -
Vimu1g02101 349 Pfam Protein tyrosine and serine/threonine kinase 42 309 IPR001245 GO:0004672|GO:0006468
Vimu1g02101 349 SUPERFAMILY Protein kinase-like (PK-like) 24 310 IPR011009 -
Vimu1g02101 349 Gene3D Transferase(Phosphotransferase) domain 1 115 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02101 Vimu-Chr1 29893601 29897135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02101 5 323 Receptor kinase-like Gene Family AT1G66980 47.401 3.78e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02101 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02101 - - gmx:100813645 629.017