Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02099 ATGACGTTATTTATTGCACTGTTGATATACAAATGGAAAAGTCGGCATTTGTCCATGTACGAAAATATTGAAAATTACTTGGAACATGCCAATTTGATGCCTATCAGATATTCATACAAGGAAATCAAAAAGATGACCGGAGGTTTCAAGGATAAATTGGGTGAAGGAGGATATGGTTCTGTGTTTAAGGGAAAGTTGTGTAGTGGACCTTCTGTGGCAATAAAATTGTTAGGTAAATCAACAGGTAATGGTCAAGATTTTATCAGTGAAGTTGCAACTATCGGAAGAATTCATCATCAAAATATTGTAAAATTGGTTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTACGAATTCATGCCTAATGGATCTTTAGATAAAATTATTTTTTCCAAAGATGGAAATATACATTTAAGTTATGATGAAATATATCATATTTCAATTGGAATAGCTAGAGGGATAGCTTATCTTCATCATGGGTGTGAGATGCAAATTCTGCATTTTGATATCAAACCCCACAACATCTTACTAGATGGAAAGCTCACCCCAATGGTCTCGGACTTTGGATTGGCAAAATTATATCCAATAGACAATAGCGTTGTCACAATGACAGGAGCAAGAGGAACCATTGGGTATATGGCTCCAGAATTATTTTATAATAACATTGGAAGAATATCTCAGAAGGCTGATGTTTATAGCTTTGGAATGCTTCTTATGGAGATGGCAAACAAAAGGAAAAACCTAAATCCACATGCACAACATTCAAGTCAACTGTATTTTCCTTTTTGGATTTACAAATATATTGGAAAAGAAAAAGATATAGATATTGAAGATGTCAAAGAGGAAGAAAAGGAAGAAGTAAAGAAAATGATTATAGTTGCACTTTGGTGCATACAATTGAAACCAAATGACCGTCCCACAATGAGTGAAGTAGTTAAAATGCTTGAAGGAGACATTGAAAGCTTGAAAATACCTCTAAAACCTACTTTATTTCCGGATGAAACAATGTCAAGCGACTTAAGCTTCACTAGTTCTTCTAATTCTTCCACGTAA 1059 0.3418 MTLFIALLIYKWKSRHLSMYENIENYLEHANLMPIRYSYKEIKKMTGGFKDKLGEGGYGSVFKGKLCSGPSVAIKLLGKSTGNGQDFISEVATIGRIHHQNIVKLVGFCVEGSKRALVYEFMPNGSLDKIIFSKDGNIHLSYDEIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDGKLTPMVSDFGLAKLYPIDNSVVTMTGARGTIGYMAPELFYNNIGRISQKADVYSFGMLLMEMANKRKNLNPHAQHSSQLYFPFWIYKYIGKEKDIDIEDVKEEEKEEVKKMIIVALWCIQLKPNDRPTMSEVVKMLEGDIESLKIPLKPTLFPDETMSSDLSFTSSSNSST 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02099 352 Gene3D Transferase(Phosphotransferase) domain 1 122 326 - -
Vimu1g02099 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vimu1g02099 352 SUPERFAMILY Protein kinase-like (PK-like) 32 318 IPR011009 -
Vimu1g02099 352 SMART serkin_6 47 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02099 352 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 339 IPR045874 GO:0004672
Vimu1g02099 352 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vimu1g02099 352 FunFam PR5-like receptor kinase 122 329 - -
Vimu1g02099 352 FunFam serine/threonine-protein kinase PBS1-like 16 121 - -
Vimu1g02099 352 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02099 352 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Vimu1g02099 352 ProSiteProfiles Protein kinase domain profile. 47 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02099 Vimu-Chr1 29884621 29885679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02099 36 342 Receptor kinase-like Gene Family AT5G38280 48.882 1.87e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02099 Pkinase 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02099 - - gmx:100305367 541.962