Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02093 ATGGAAAATGAAGGCTCGAATAGGTGTTCTTGCTCAGCACGGACTCTGGTGTCAATATTGGCTTCAATTATTCTCCTATTCCAACCAGATTACTGCATCGCTAAGCGACAGCCACCATGTCCTCCTTCATCATGCGGCCAAATTCGCAACATATCTTACCCATTTCGCCTCAAAGGTGACCCAAGCCAATGCGGCGACCAAAGGTATGAGTTAGATTGCGTTAATAACGTCACACTCTTAACCTTGTTCTCGGCGAAATACCATGTACGAGACATCGACTACAAGCAATACAAAGTCGTTGTCAGTGACCCGGGTCAGGAGGAAGAAGCTAATTGCTCCTTCATCCCTCGCAATTTCTTAACAGACAGTAATTTCAGGCCCACGGGCCTGGTTGGCCCAGATGATTTCGGATCGGAGCCGTTCACTTGGGAACACTGGTATACTCTCCGAATAGGGTACTTCAACTGCGCGAATCCTGTGAGTGACGATCCACGGTATGTTAAGGTGGAGAGAGGTGAATGTGGGAGAGGTGGGAACGTGTACGCGGTATTGGAACCGTCTTTGTATGAGGTTGGTGTGAAGGACATCAAGGTTGGGTGCGATCTGATGGTGGCTACAGTGGTTGACTGGTCACCGAAAGAGAATGTTAGCTACGACGAGATCCGTGGCGTGATAAGTGAGGGAATTCGGTTGTCGTGGTTGCCGGTGATTTGCGAGGATCGATGTGGAAGGGGAACGGAGTGTAAGGTTATCAACGGAGAAGTCCAGTGTGAGAAGCATTACTGCCATTACGCCTACCACACCACTGATAAATGCGATAGCCATCTAAATCCCATTAGGTACGAGTATAAAGAAATAATAAAAATGACTGGAGGTTTCAGAGTGAAATTGGGTCAAGGAGGCTTTGGTGTTGTATATAAAGGAAAACTCCAAAGTGGGTTGGATGTAGCAGTAAAGATGTTGAGCAAATCTAATGATAATGGACAAGATTTCATGAATGAAGTTGCTACCATTGGAACAATACATCATGTAAATGTGGTGCGTCTTCTTGGATACTGTGTACATGGAAAAAAGCGTGCTCTAGTTTATGAATTTATGTCAAATGGATCATTAGATAAATATATTTTCTCCAAAGAAGAAAATACTCGTTTAAGTTATGAGAAAATATATGAAATATCTCTTGGAATAGCTGGTGGGATTTCATATTTGCATCAAGGTTGTGATATTCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTGCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCAGCAAATGATGGTGTTATCAATATGACTGCAGCAAGAGGAACATTGGGTTATATGGCTCCAGAATTGTTTTACAAAAATATGGGTGGAGTATCTTATAAAGCTGATATATATAGTTTTGGAATGCTTTTAATGGAAATGGCAAGTAGGAGGAGGAACTCAAATCCTCATACAGAACATTCAAGTCAAAGTTACTTTCCTTTTTGGATTTATGATCAATTTCATGACAAAAAAAATGTTGATATAGAAGATGCTTCAGAAGAGGAAAATATTCTGGCTAAAAGGATGTTCTTGGTAGCACTTTGGTGTATTCAGTTAAATCCAAGTGATCGGCCTTCAATGAACAAGGTAATAGAGATGCTTGAAGGGATGGTTGAAGGTCTTGAATTGCCTCCAAGGCCTTCATTTTATAAAAATGAAACATACAGACATGAAAATATTAGCTCTAGACATGATGATATTAGCTCTGACTTTTCTGAATTCACTTACTCTGATAGTCAACCTAATAAAAGCATAACATTATATTGA 1848 0.4053 MENEGSNRCSCSARTLVSILASIILLFQPDYCIAKRQPPCPPSSCGQIRNISYPFRLKGDPSQCGDQRYELDCVNNVTLLTLFSAKYHVRDIDYKQYKVVVSDPGQEEEANCSFIPRNFLTDSNFRPTGLVGPDDFGSEPFTWEHWYTLRIGYFNCANPVSDDPRYVKVERGECGRGGNVYAVLEPSLYEVGVKDIKVGCDLMVATVVDWSPKENVSYDEIRGVISEGIRLSWLPVICEDRCGRGTECKVINGEVQCEKHYCHYAYHTTDKCDSHLNPIRYEYKEIIKMTGGFRVKLGQGGFGVVYKGKLQSGLDVAVKMLSKSNDNGQDFMNEVATIGTIHHVNVVRLLGYCVHGKKRALVYEFMSNGSLDKYIFSKEENTRLSYEKIYEISLGIAGGISYLHQGCDIQILHFDIKPHNILLDDNFVPKVSDFGLAKLHAANDGVINMTAARGTLGYMAPELFYKNMGGVSYKADIYSFGMLLMEMASRRRNSNPHTEHSSQSYFPFWIYDQFHDKKNVDIEDASEEENILAKRMFLVALWCIQLNPSDRPSMNKVIEMLEGMVEGLELPPRPSFYKNETYRHENISSRHDDISSDFSEFTYSDSQPNKSITLY 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02093 615 SUPERFAMILY Protein kinase-like (PK-like) 275 562 IPR011009 -
Vimu1g02093 615 Gene3D Transferase(Phosphotransferase) domain 1 366 570 - -
Vimu1g02093 615 FunFam PR5-like receptor kinase 366 572 - -
Vimu1g02093 615 FunFam serine/threonine-protein kinase PBS1-like 262 365 - -
Vimu1g02093 615 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Vimu1g02093 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 580 IPR045874 GO:0004672
Vimu1g02093 615 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Vimu1g02093 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Vimu1g02093 615 Gene3D Phosphorylase Kinase; domain 1 256 365 - -
Vimu1g02093 615 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02093 615 CDD STKc_IRAK 297 564 - -
Vimu1g02093 615 ProSiteProfiles Protein kinase domain profile. 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02093 615 Pfam Protein tyrosine and serine/threonine kinase 295 561 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02093 Vimu-Chr1 29778058 29781458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02093 23 577 Receptor kinase-like Gene Family AT5G38260 33.987 5.83e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02093 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02093 - - pvu:PHAVU_011G197500g 662.144