Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02091 ATGGGCTATCCTCGTGGCTTCGATCTGTTGTGTACGGATGCAGATGAGACTGTGTTGGATCTGCCTTCTGTTCCAATAAAATTGTATGTCCAAAGCATAGATTACAAATCACAGCAAATCCAACTCTACGACCCTCAAAACTGCCTTCCTAGGCAGCTCATGAAGCTCGGCAATTCCTCTATTTCACCATTTAAATTCCTATCATACGAACCATTCCCATATGGGGACCGGAATGTTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGATTCTGGATCTGACTTTCTTGATCCCCAGATAGTATCGTGCACAAAGTTGAGTGATGTTTACTCCGTCCAGTGGTATGTACGGGATTATATGAAGAACACCGTGCTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGTAGATACAAGAATGATACCCAAAGTGAAGTTGAATGTTTTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGAAGATACACCCACAGGGGGAATAGGTGGTTTCCTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGTATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACCAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAGAGTTTGGGAGAAGGAGCTCATGGAGCAGTGTTCAAGGGAATGCTCTCCCGTGATATTCTCGTTGCTGTCAAGATACTCAATGACGCTGTTGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCATGTTAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTCCCAAATGGATCACTGCAGAGATTCTTGGCTCCACCCGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAAAGGGATTGAGTATCTCCATCTGGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGTTAGATGATCACTTCAATCCAAAGATCACTGATTTTGGACTTGCTAAATTGTGTCCTAAAAATCAAAGTACTGTGTCTGTGACTGCAGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTCTCTTATAAGTCTGACATTTACAGCTACGGAATGTTGCTTCTGGAGATGGTAGGAGGAAGAAAGAACACAAATATGTCAGTGGAGGAAAGTTTCCAAGTTCTGTACCCTGAGTGGATCCATAATTTGGTGGAAGCACGAGACGTGGAAGTTACAATTGAGGAGGAGGGAGATGCTAAAATTGCAAGGAAACTTGCCATTATAGGACTTTGGTGTATTCAGTGGAACCCAGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTGCACCCCCTACTCCTTTTGATAAGACCGGTTCCTCAAGAACAAATGCAGCTGTTCAAACAAGACACCAGAATTTCGAGTTGGAAATTATTCATGAAATGGAAGAGTAA 1665 0.43 MGYPRGFDLLCTDADETVLDLPSVPIKLYVQSIDYKSQQIQLYDPQNCLPRQLMKLGNSSISPFKFLSYEPFPYGDRNVSFFRCNSMSCPILQLDSGSDFLDPQIVSCTKLSDVYSVQWYVRDYMKNTVLAEWTSPNCSSCEAQGSKCRYKNDTQSEVECFVCPTNGLPTSTIVLIAAEDTPTGGIGGFLLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVAKGIEYLHLGCDHRILHFDINPHNVLLDDHFNPKITDFGLAKLCPKNQSTVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSVEESFQVLYPEWIHNLVEARDVEVTIEEEGDAKIARKLAIIGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIAPPTPFDKTGSSRTNAAVQTRHQNFELEIIHEMEE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02091 554 FunFam PR5-like receptor kinase 316 521 - -
Vimu1g02091 554 Gene3D Phosphorylase Kinase; domain 1 215 315 - -
Vimu1g02091 554 Pfam Protein kinase domain 245 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02091 554 ProSiteProfiles Protein kinase domain profile. 241 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02091 554 Gene3D Transferase(Phosphotransferase) domain 1 316 518 - -
Vimu1g02091 554 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 530 IPR045874 GO:0004672
Vimu1g02091 554 FunFam serine/threonine-protein kinase PBS1-like 209 315 - -
Vimu1g02091 554 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Vimu1g02091 554 SUPERFAMILY Protein kinase-like (PK-like) 224 512 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02091 Vimu-Chr1 29757661 29759393 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02091 207 524 Receptor kinase-like Gene Family AT1G66910 47.385 1.19e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02091 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02091 - - gmx:100819302 925.62