Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02088 ATGACAACCAGTACGAAACAATTGGACGACCCAGATGAACTGCAATATTTTGGTTCAGGAATATTCATAGGACGACAAATTATACCAATATTTTTGCCAGGCAGATATCTGTTTGGAGTTGTACTCATTCTTGTGTTATTCATCTACAAATGGCGACGAAGACATTCTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGTCATCTAAATCCCATCAGGTACGAATACAACGAAATAAAAAAAATGACTAATGGTTTCAGAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCGAAGTGGATTAGATGTAGCTGTAAAGATGTTGACCAAATCCAATGATAATGGACAAGATTTCATGAATGAAGTTGCTACCATAGGAACAATACATCATGTAAATGTGGTGCGGCTTATTGGATATTGTGTTCATAGAAAAAAACGTGCTTTAGTTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAAAAAGCACCCATTTAAGCTATGAAAAAATACATGAAATATCTCTTGGAATATCACGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACATTTGATGGTGTTGTGAATATGACTGTAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATTTTACAGCAATATGGGTGGAGTAACCTATAAAGCTGATGTGTACAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGGAACTCAAATCCTGATGCTAAACATTCAAGTCAAAATTATTTTCCTTTTTGGATTTATGATCAATTTAAATCAGAGAAAAACATTGACATGCAAGATGCTTCATCAGAAGAGAATATTCTAGTTAAAAGGATGTTCTTAATTGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAAAAAGGTAATAGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAAGCCTTCTTTTTACAATATTGAAGCATACGAACATGATGATATTGGCTTTGATGTCATTGAGTACACTTACTCTACTAGTCAGCATGATGAAAGCATAACATCGGATTCACCAAAGAATATTGAAACGGGCATAAATAAGATAACTTAA 1251 0.3405 MTTSTKQLDDPDELQYFGSGIFIGRQIIPIFLPGRYLFGVVLILVLFIYKWRRRHSSIYENIENFLLDSHLNPIRYEYNEIKKMTNGFRVKLGQGGFGAVYKGKLRSGLDVAVKMLTKSNDNGQDFMNEVATIGTIHHVNVVRLIGYCVHRKKRALVYEFMSNGSLDKYIFSKEKSTHLSYEKIHEISLGISRGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATFDGVVNMTVARGTLGYMAPELFYSNMGGVTYKADVYSFGMLLMEMTSKRRNSNPDAKHSSQNYFPFWIYDQFKSEKNIDMQDASSEENILVKRMFLIALWCIQLNPSDRPSMKKVIEMLEGVIESLELPPKPSFYNIEAYEHDDIGFDVIEYTYSTSQHDESITSDSPKNIETGINKIT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02088 416 FunFam PR5-like receptor kinase 161 368 - -
Vimu1g02088 416 SMART serkin_6 86 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02088 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vimu1g02088 416 PANTHER RUST RESISTANCE KINASE LR10-RELATED 59 376 IPR045874 GO:0004672
Vimu1g02088 416 Gene3D Transferase(Phosphotransferase) domain 1 161 366 - -
Vimu1g02088 416 SUPERFAMILY Protein kinase-like (PK-like) 71 357 IPR011009 -
Vimu1g02088 416 Gene3D Phosphorylase Kinase; domain 1 63 160 - -
Vimu1g02088 416 ProSiteProfiles Protein kinase domain profile. 86 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02088 416 Pfam Protein tyrosine and serine/threonine kinase 90 356 IPR001245 GO:0004672|GO:0006468
Vimu1g02088 416 FunFam serine/threonine-protein kinase PBS1-like 56 160 - -
Vimu1g02088 416 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02088 Vimu-Chr1 29689084 29690334 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02088 75 382 Receptor kinase-like Gene Family AT5G38280 50.479 8.84e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02088 PK_Tyr_Ser-Thr 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02088 - - gmx:100820366 635.95