Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02084 ATGCTAAATTTTCAAAATCCCGCTCTTCTGCTGACGCTGTTGCTTCTGCTATGGAAGCCTGCCATATGCAAAAATGGGTGCACGGAAAAGTGTGGCCCCATTTACATTCAATTCCCATTTCACCTCAGAAATAGCAAGTTCAATCACACCATGGGCTATCCTCGTGGCTTCGATCTGTTGTGTACGGATGCATATAAGACTGTGTTGGATCTACCTTCTGTTTCAATAAAATTGTATGTCCAAAGCATAGATTACAAGTCACAGCAAATCCAACTCTACGACCCTCAAAGTTGCCTTGCTAGGCAGCTCATGAAGCTCGGCAATTCCTCCATTTCACCATTTAAATTCCTATCATATGGGGACCGGAATGTTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGATTCTGGATCTGACTTTCTTGATCCCCAGATAGTATCGTGCAGAAAGTTGAGTGATGTTTACTCCGTCCAGTGGTATGTACGGGATTATATGAAGAACACCGTGCTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGTAGATACAAGAATGATACCCAAAGTGAAGTTGAATGTTTTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGAAGATACACCCACAGGGGGAATAGGTGGTTTCCTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGTATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACCAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGGGAATGCTCTCCCGTGATATTCTCGTTGCTGTCAAGATACTCAATGACGCTGTTGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCATGTTAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTCCCAAATGGATCACTGCAGAGATTCTTGGCTCCACCCGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAAAGGGATTGAGTATCTCCATCTGGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGTTAGATGATCACTTCAATCCAAAGATCACTGATTTTGGACTTGCTAAATTGTGTCCTAAAAATCAAAGTACTGTGTCTGTGACTGCAGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTCTCTTATAAGTCTGACATTTACAGCTACGGAATGTTGCTTCTGGAGATGGTAGGAGGAAGAAAGAACACAAATATGTCAGTGGAGGAAAGTTTCCAAGTTCTGTACCCTGAGTGGATCCATAATTTGGTGGAAGCACGAGACGTGGAAGTTACAATTGAGGAGGAGGGAGATGCTAAAATTGCAAGGAAACTTGCCATTATAGGACTTTGGTGTATTCAGTGGAACCCAGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTGCACCCCCTACTCCTTTTGATAAGACCGGTTCCTCAAGAACAAATGCAGCTGTTCAAACAAGACACCAGAATTTCGAGTTGGAAATTATTCATGAAATGGAAGATGCTACTACGGTGACAGAGGAAATAGCCGGTTCATCCTTCGTGCGTCTAAGGAGTATTCGGAGGAGGTGTTTCATCCTTCGTGAAGTATTCAGAGGAGGTGTCTCATCCTTTGTGAAGATTCAAAGGAGGTGTAGGTTCATCTCTTGTGGTATCAAGAGAGGTGGTTTCTAA 1923 0.4316 MLNFQNPALLLTLLLLLWKPAICKNGCTEKCGPIYIQFPFHLRNSKFNHTMGYPRGFDLLCTDAYKTVLDLPSVSIKLYVQSIDYKSQQIQLYDPQSCLARQLMKLGNSSISPFKFLSYGDRNVSFFRCNSMSCPILQLDSGSDFLDPQIVSCRKLSDVYSVQWYVRDYMKNTVLAEWTSPNCSSCEAQGSKCRYKNDTQSEVECFVCPTNGLPTSTIVLIAAEDTPTGGIGGFLLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVAKGIEYLHLGCDHRILHFDINPHNVLLDDHFNPKITDFGLAKLCPKNQSTVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSVEESFQVLYPEWIHNLVEARDVEVTIEEEGDAKIARKLAIIGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIAPPTPFDKTGSSRTNAAVQTRHQNFELEIIHEMEDATTVTEEIAGSSFVRLRSIRRRCFILREVFRGGVSSFVKIQRRCRFISCGIKRGGF 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02084 640 FunFam PR5-like receptor kinase 346 551 - -
Vimu1g02084 640 SUPERFAMILY Protein kinase-like (PK-like) 288 542 IPR011009 -
Vimu1g02084 640 Gene3D Transferase(Phosphotransferase) domain 1 350 548 - -
Vimu1g02084 640 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vimu1g02084 640 ProSiteProfiles Protein kinase domain profile. 223 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02084 640 Pfam Protein kinase domain 294 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02084 640 Gene3D Phosphorylase Kinase; domain 1 280 349 - -
Vimu1g02084 640 PANTHER RUST RESISTANCE KINASE LR10-RELATED 258 561 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02084 Vimu-Chr1 29417634 29421636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02084 252 554 Receptor kinase-like Gene Family AT1G66910 45.846 3.36e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02084 Pkinase 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02084 - - gmx:100819302 942.954