Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02081 ATGCAACCAGATAACTGTCTCGCTAAGCGACACCCACCATGTCCTACTTCATCATGCGGCCAAATTCGCAACATAACCTACCCATTTCGGCTGAAAGGCGACCCAGGTCAGTGCGGCGACCCAAGGTATGAGTTGGATTGCATTAACAACACCACTCTCTTCTTCTGGGAAAAATCCCTTGTACGAGAGATCGACTACAAGGGATACAACATCCTTCTTAGGGACCCAGGTCAGGACGAGGACGCTAACTGCTCTTTCATCCCTCGCTATTTCTTAAAGGATCGTAGTATGTATAGTAGTTTGTGGTCCTTGGTCCATCCATTGAAGCCGATTGCAGACTGGGAAATGGTCAGCATAGGGTACTTCAACTGTTTGAATCCTGTGAATGACGATCCACGATATGTTAAGGTGGACAGGAGTGGATGTGGCAGCGGAGGGCACGTGTACGCCGTATTAGGATCTTGGTATGAGTTTAGTGTGAAGGACATCAAGGTTGGATGCGATCTGATGGTGGCTACGGTTTGGACACCGAAGCAGAATGTTACCTACCACAAGTATGGTGACTCTGACAGCTGGGAGGTTGAAGTGCTTGAAGGAATATTGGAGCGGAATGTTACATATGATGATATCCAACGCAAAATAAGTGAGGGATTTTGGTTGTCGTGGTTGCCTATTGTTTGTGAGGATCGATGTGGAAGGGAGACGGGGTGTCATCTTATCAATCAATCCAGCAGTGAAGTCCGGGGGTTGAGGGGGAGCTGGTCTCATAAGGCTATGAACTCTTTGTATAATAAAAAGAGTTTATACACAGAAGAAACTGACCTTGGCAAAAGGTTTTGGGCAATATTGAAGGGCGATATATTTGTAGGAATAGGTAGCAGAATGACATCCACTACGAAACAATTGGACGACCCAAATGAAGTGCAATATTTTAATGGAGGAGTATATATAGGACGAAACGGTATATTAGCATTTTTGACAGGCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTCATCTACAAATGGCGACGAAGACATTCTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGTCATCTAAATCCTATCAGGTACGAACATAACGAAATAAAAAAAATGACTAAAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTGTATAAAGGAAAACTCCGAAGTGGATTAGATGTAGCTGTAAAGATGTTGAGCAAATCCAATAATAATGGACAAGATTTCATAAATGAAGTAGCTACCATCGGAACAATACATCATGTAAATGTGGTGCGTCTTATTGGATATTGTGTTCATAGAAAAAAACGTGCTCTAGTTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAGAAAGCACCCATTTAAGCTATGAAAAAATACATGAAATATCTCTTGGAATAGCTCATGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTGTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACAATTGATGGTGTTGTGAATATGACTGCAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATATTACAACAATATGGGTGGAGTAACCTATAAAGCTGATGTTTACAGTTTTGGAATGCTTTTGATGGAAATGATAAGTAAGAGAAGGAACTCAAATCCTGATGCTGAACATTCAAGTCAAAATTATTTTCCTTTTTGGATTTATGATCAATTTAAAACAGAGAAAAACATTGACATGCAAGATGCTTCATCAGAAGAGAATATTCTAGTTAAAAGGATGTTCTTAATTGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAAAAAGGTAATAGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAAGCCTTCTTTTTACAATATTGAAGCATACGAACATGATGATCTTGGTTCTGATGTCATTGAGTACACTTACTCTACTAGTCAGCATGATGAAAGCATAACATCGGATTCACCAAAGAATATTGAAACGGGCATAAATAAGATAACTTAA 2133 0.3905 MQPDNCLAKRHPPCPTSSCGQIRNITYPFRLKGDPGQCGDPRYELDCINNTTLFFWEKSLVREIDYKGYNILLRDPGQDEDANCSFIPRYFLKDRSMYSSLWSLVHPLKPIADWEMVSIGYFNCLNPVNDDPRYVKVDRSGCGSGGHVYAVLGSWYEFSVKDIKVGCDLMVATVWTPKQNVTYHKYGDSDSWEVEVLEGILERNVTYDDIQRKISEGFWLSWLPIVCEDRCGRETGCHLINQSSSEVRGLRGSWSHKAMNSLYNKKSLYTEETDLGKRFWAILKGDIFVGIGSRMTSTTKQLDDPNEVQYFNGGVYIGRNGILAFLTGRYLFGVVLILVLFIYKWRRRHSSIYENIENFLLDSHLNPIRYEHNEIKKMTKGFKVKLGQGGFGAVYKGKLRSGLDVAVKMLSKSNNNGQDFINEVATIGTIHHVNVVRLIGYCVHRKKRALVYEFMSNGSLDKYIFSKEESTHLSYEKIHEISLGIAHGIAYLHQGCDMQIVHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNMTAARGTLGYMAPELYYNNMGGVTYKADVYSFGMLLMEMISKRRNSNPDAEHSSQNYFPFWIYDQFKTEKNIDMQDASSEENILVKRMFLIALWCIQLNPSDRPSMKKVIEMLEGVIESLELPPKPSFYNIEAYEHDDLGSDVIEYTYSTSQHDESITSDSPKNIETGINKIT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02081 710 ProSiteProfiles Protein kinase domain profile. 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02081 710 SUPERFAMILY Protein kinase-like (PK-like) 367 651 IPR011009 -
Vimu1g02081 710 PANTHER RUST RESISTANCE KINASE LR10-RELATED 353 670 IPR045874 GO:0004672
Vimu1g02081 710 FunFam serine/threonine-protein kinase PBS1-like 350 454 - -
Vimu1g02081 710 Pfam Protein tyrosine and serine/threonine kinase 383 650 IPR001245 GO:0004672|GO:0006468
Vimu1g02081 710 SMART serkin_6 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02081 710 Gene3D Phosphorylase Kinase; domain 1 345 454 - -
Vimu1g02081 710 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Vimu1g02081 710 Gene3D Transferase(Phosphotransferase) domain 1 455 660 - -
Vimu1g02081 710 FunFam PR5-like receptor kinase 455 662 - -
Vimu1g02081 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vimu1g02081 710 Pfam Wall-associated receptor kinase galacturonan-binding 14 73 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02081 Vimu-Chr1 29407439 29410775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02081 369 692 Receptor kinase-like Gene Family AT5G38280 48.338 9.11e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02081 PK_Tyr_Ser-Thr 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02081 - - gmx:100820366 848.58