Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02079 ATGGAGGACGTGTTTTGTGCTTACTGGTTGATCATACTCTACACATTTGATGTTCATTTGTTGATCAAGATTTCTATCAATCTTTGGAAAGATTGTTGTTGTCCTGTTGAGATTACAGGAGGTGGACTCAAGAGGGGATATCTTGCTGCAGATCTTTGTGTTGCTGCGTATATTTTGGTTAGAGGGGCACCTTTTAATTCAAAAAGCGAGGCAATAATTGGAGGAAGAACAGTTTTTTCATTATCAGAATTTGAAGGATGGAAAATGAAGCGACACCCACCATGTCCTACTTCATCATGCGGCCAAATTAACATAAGTTACCCATTTCGGCTGAAAGGCGACCCAGGTCAGTGCGGCGACCCAAGGTATGAGTTAGATTGCGTTAATAACGCTACTCTCTTATTAACCTTGCTCTCGGCAAAATACCTTGTACGAGAGATCGACTACAAGGGATACAAAATCCTTCTTAGGGACCCAGGTCAGGACGAGGACGCTAATTGCTCTTTCATCCCTCGCTATTTCTTAACGCATCGTAGTTTCTGGTCCCCGGTTGGCCCAGATGATTTCGGATCGGAGCCGTTCACTTGGGAACACTGGTCTACTGTCGGAATAGGGTACCTGAACTGCTTGAATCCTGTGAATGACGATCCACGATATGTTAAGGTGGACAGGAGTGGATGTGGCGGCGGAGGGCACGTGTACGCGGTATCAGGATTTTGGAATGATGTTCTTGTGAAGGACATCAAGGTTGGATGCGATCTGATGGTGGCTACGGTTTGGACACCGAAGCAGAATGTTACCTACCACAAGTATGATGACTATGACAGCTGGGATGTTGAAGAGCTTGAAGGAATATCGGAGCGGAATGCTACATATGATGATATCCAACGCAAAATAAGTGAGGGATTTTGGTTGATAGATGTGGAAGGGGGACAGAGTGTCTGCATATCAATGAATCCAGCGGAGAAGTCTTTTGTAAGAACCATTACTGTCATTACGCTTACCACACCACCCAAAAGTGCGAACCTTGGCAAAAGCTTTTGGGCTATATTCGAGGGCGATATATTTGTAGGAATAGGTAGCAGAATAACATTCAGTACGAAACAATTGGACCACCCTGTTGGACTGCAATATTTTGATGGAGGAATATTCATAGGACGACAAATTATATCAATATTTTTGGCTGCCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTCATCTACAAATGGCGACGAAGACATTCTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGTCATCTAAATCCCATCAGGTACGAATACAATGAAATAAAGAAAATGACTAAAGGTTTCAGAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCGAAGTGGATTAGATGTAGCTGTAAAGATGTTGACCAAATCCAATGATAATGGGCAAGATTTCATGAATGAAGTTGCTACCATAGGAACAATACATCATGTAAATGTGGTGCGGCTTATTGGATATTGTGTTCATAGAAAAAAACGTGCTCTAGTTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAGAAAGCACCCATTTAAGCTATGAAAAAATACATGAAATATCTCTTGGAATAGCTCGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACAATTAATGGTGTTGTGAATATGACTACAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATATTACAACAATATGGGTGGAGTAACCTATAAAGCTGATATGTACAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGGAATTCAAATCCTGATGCTGAACATTCAAGTCAAAATTATTTTCCTTTTTGGATTTATGATCAATTTAAAACAGAGAAAAACATTGACATGCAAGATGCTTCATCAGAAGAAGAGAATATTCTAGTTAAAAGGATGTTCTTAATTGCACTTTGGTGTATTCAATTCAATCCAAGTGATCGTCCTTCAATGAAAAAGGTAATAGAAATGCTTGAAGGGGTGATTGAAAGCCTTGAATTGCCTCCAAAGCCTTCTTTTTACAATATTGAAGCATACGAACATGATTATATTGGCTCTGATGTCACTGAGTACACTTACTCTACTAGTCATCATGATGAAAGCATAACATCAGATTCACCAAAGAATATTGAAACGGGCATAAATAAGATAACTTAA 2340 0.3897 MEDVFCAYWLIILYTFDVHLLIKISINLWKDCCCPVEITGGGLKRGYLAADLCVAAYILVRGAPFNSKSEAIIGGRTVFSLSEFEGWKMKRHPPCPTSSCGQINISYPFRLKGDPGQCGDPRYELDCVNNATLLLTLLSAKYLVREIDYKGYKILLRDPGQDEDANCSFIPRYFLTHRSFWSPVGPDDFGSEPFTWEHWSTVGIGYLNCLNPVNDDPRYVKVDRSGCGGGGHVYAVSGFWNDVLVKDIKVGCDLMVATVWTPKQNVTYHKYDDYDSWDVEELEGISERNATYDDIQRKISEGFWLIDVEGGQSVCISMNPAEKSFVRTITVITLTTPPKSANLGKSFWAIFEGDIFVGIGSRITFSTKQLDHPVGLQYFDGGIFIGRQIISIFLAARYLFGVVLILVLFIYKWRRRHSSIYENIENFLLDSHLNPIRYEYNEIKKMTKGFRVKLGQGGFGAVYKGKLRSGLDVAVKMLTKSNDNGQDFMNEVATIGTIHHVNVVRLIGYCVHRKKRALVYEFMSNGSLDKYIFSKEESTHLSYEKIHEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATINGVVNMTTARGTLGYMAPELYYNNMGGVTYKADMYSFGMLLMEMTSKRRNSNPDAEHSSQNYFPFWIYDQFKTEKNIDMQDASSEEENILVKRMFLIALWCIQFNPSDRPSMKKVIEMLEGVIESLELPPKPSFYNIEAYEHDYIGSDVTEYTYSTSHHDESITSDSPKNIETGINKIT 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02079 779 MobiDBLite consensus disorder prediction 759 779 - -
Vimu1g02079 779 Gene3D Transferase(Phosphotransferase) domain 1 523 729 - -
Vimu1g02079 779 FunFam PR5-like receptor kinase 523 731 - -
Vimu1g02079 779 FunFam serine/threonine-protein kinase PBS1-like 418 522 - -
Vimu1g02079 779 PANTHER RUST RESISTANCE KINASE LR10-RELATED 421 739 IPR045874 GO:0004672
Vimu1g02079 779 ProSitePatterns Protein kinases ATP-binding region signature. 454 476 IPR017441 GO:0005524
Vimu1g02079 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Vimu1g02079 779 Pfam Protein kinase domain 453 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02079 779 Gene3D Phosphorylase Kinase; domain 1 426 522 - -
Vimu1g02079 779 SMART serkin_6 448 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02079 779 SUPERFAMILY Protein kinase-like (PK-like) 433 720 IPR011009 -
Vimu1g02079 779 ProSiteProfiles Protein kinase domain profile. 448 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02079 779 Pfam Wall-associated receptor kinase galacturonan-binding 95 156 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02079 Vimu-Chr1 29328488 29333651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02079 437 760 Receptor kinase-like Gene Family AT5G38280 48.640 1.84e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02079 Pkinase 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02079 - - gmx:100820366 830.091