Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02062 ATGTCGTTTCAAGACTCAGACAAAACGACGTCCACGGGGAGTGCGTTCGACGCGCCGGCGGCGTCCCGGCTCGTGATGGAGTTGCGTGGAGCCTTCGCTACGGGCAAAACTCGCAGTTACAATTGGCGAGTGACGCAGCTCAAAGCGCTCGAGAAACTCGTCACCGATCACGAGCCGGAGATCATCGACGCGCTCCGAAAAGACCTCGCGAAGCCGCCGCTCGAAACCGTGGCTTACGAGGTGCTGTTGTTTATTCCGCTCTCGCTGTTACTCTCTGTGTTTTACTTTCTCTGTAATTGTGGTGCGTGTCGTTTGACCTCGGTAGTGGAAGAGGAATGTTTCGAAAATTGTTCTTCACAGGTGGATTTCGTGATAGAGATTTTGTTCAGTGTTGACGTGTTGCATAGTGTTATTTTGGGGATATTTCTATTTATTTATTTTAGTTTTGTTGGAAGGGGTATAATTGAATTTATCGGTTGGTTATTTCTCTGTGGGATTGCGGTTCGCCTTTCTTTGCCTGTGGTGGTGGAAACGTTGCCGTTTGGGACTGGGTGGTATGATATTTTCCAACTTCTCGTAACTGTGGGTAGGTTTGTGTTGCAGATTGCTATGTTGAAAAACTCAAGTAAAGTTGCGCTCAAAGAATTGAAACATTGGATATCTCCCGAAAAGGTCAAAACTTCACTCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAGCCACTGGGGGTTGTTCTAGTCATCTCGGCATGGAACTACCCTTTTCTTTTGTCACTTGATCCAGTCATTGGAGCTATAGCAGCTGGTAATGCTGTGGTTTTAAAACCATCAGAAATTGCTCCAGCCACATCATCACTGATGGCAAAACTGCTGGGAGACTACATGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCCGCATTGCTGGAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGTGTTGTGATGGCTGCTGCTGCGAAACACCTTACACCAGTTGTGCTGGAGCTCGGAGGAAAATCTCCAGTTGTAGTCGATTCAAACATCAATTTAAAGGTAGCAACAAGACGAATAATTGCCGGAAAGTGGGGTTGTAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGAATATGCTCCCAAGTTGGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAATCCATTGGAATCAGAAGATTTGTCTCGTATTGTAAACTCCAATCACTTCAATCGCTTGAAAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTCATGGAGGCAAAAAGGATGAAAGCAAATTGAAGATTAGCCCCACTCTTCTCTTGGATGTCCCACGGGATTCTTTGATTATGAGTGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACGGTAGACAAACTGGAAGAAAGCTTTGTTGTGATCAATTCCGGACCAAAGCCTCTCGCTGCATATATATTTACAAATAATAAGAAGCTCAAGGAACTATTTGTTAGGAATATTTCAGCTGGCGGCGTGGTTGTTAATGACACTACTTTACATCTTGCGGTTCATACTTTGCCATTTGGAGGAGTTGGTGAGAGTGGAGTGGGGGCATACCACGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAGGCAGTTCTCTATCGCAGTTTTATTGGTGATGCATCAGTTAGGTACCCACCATACACAAGTACAAAGCAAAGATTGCTAAAAGCTCTCATTGGTGGTGGCATACTTGGTATTATTCGTGCCCTGTTTGGTTGGTCCTAG 1845 0.4401 MSFQDSDKTTSTGSAFDAPAASRLVMELRGAFATGKTRSYNWRVTQLKALEKLVTDHEPEIIDALRKDLAKPPLETVAYEVLLFIPLSLLLSVFYFLCNCGACRLTSVVEEECFENCSSQVDFVIEILFSVDVLHSVILGIFLFIYFSFVGRGIIEFIGWLFLCGIAVRLSLPVVVETLPFGTGWYDIFQLLVTVGRFVLQIAMLKNSSKVALKELKHWISPEKVKTSLATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEIAPATSSLMAKLLGDYMDNSCIRVVEGAVDETSALLEQKWDKIFYTGNGRVARVVMAAAAKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGCNNGQACISPDYVITTKEYAPKLVDALKTELEKFYGKNPLESEDLSRIVNSNHFNRLKKLLDDDKVSGKIVHGGKKDESKLKISPTLLLDVPRDSLIMSEEIFGPLLPILTVDKLEESFVVINSGPKPLAAYIFTNNKKLKELFVRNISAGGVVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFDAFSHKKAVLYRSFIGDASVRYPPYTSTKQRLLKALIGGGILGIIRALFGWS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02062 614 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 347 354 IPR029510 GO:0016491
Vimu1g02062 614 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 200 569 IPR016162 GO:0016491
Vimu1g02062 614 Pfam Aldehyde dehydrogenase family 234 571 IPR015590 GO:0016491
Vimu1g02062 614 PANTHER ALDEHYDE DEHYDROGENASE 198 601 IPR012394 GO:0006081
Vimu1g02062 614 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 351 551 IPR016163 GO:0016620
Vimu1g02062 614 SUPERFAMILY ALDH-like 202 582 IPR016161 GO:0016491
Vimu1g02062 614 SUPERFAMILY ALDH-like 15 85 IPR016161 GO:0016491
Vimu1g02062 614 FunFam Aldehyde dehydrogenase 194 354 - -
Vimu1g02062 614 FunFam Aldehyde dehydrogenase 351 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02062 Vimu-Chr1 28811595 28818442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02062 202 612 Aldehyde Dehydrogenase Gene Family AT1G44170 75.669 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02062 K00128 - gmx:100816594 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02062 1 28811595 28818442 Vimu1g02062 1 28811595 28818442 ECH