Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02061 ATGTTTGTGATTTGTGAACCCTGGAAAACATTTGTGTATGCTCCAAATTCATCATCGTACAACATGGCGTCGAACACGAAGAAGAAAGTGTTTGGTTCAGAAGAAGCTTTAGAGATGGTTGAGGAACTGAGAGCAGCGTTTGATTGTGGCAAGACACGTGGATGCGAATGGAGAATTTCCCAGTTGAAGGCCCTCATCAAGTTGAGTGAAGAACATGAAAAAGAGATTGTTCAAGCTCTTCACTCAGATCTGTCTAAGTCTGAAACTGAAGCCTTTGTGCAAGAGGTACTAATCTCTCTCCAAACTATAATTAATTGCTTTTAG 324 0.4074 MFVICEPWKTFVYAPNSSSYNMASNTKKKVFGSEEALEMVEELRAAFDCGKTRGCEWRISQLKALIKLSEEHEKEIVQALHSDLSKSETEAFVQEVLISLQTIINCF 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02061 107 PANTHER ALDEHYDE DEHYDROGENASE 36 103 IPR012394 GO:0006081
Vimu1g02061 107 SUPERFAMILY ALDH-like 30 103 IPR016161 GO:0016491
Vimu1g02061 107 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 44 103 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02061 Vimu-Chr1 28798196 28800605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02061 31 96 Aldehyde Dehydrogenase Gene Family AT4G34240 48.485 1.08e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02061 K00128 - pvu:PHAVU_001G0727000 130.954