Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02050 ATGGGTTACATGGGTAGGTGTTGGTTGGTTGGGGTCATAATTGTGGTGTGGTGTGCCATCTTGCTGGGCACCGCTGGAGTGAGAGGGTATCCAGCTGAGGATTTGGTGGTGAGATTGCCTGGACAACCTAATGTTGGGTTTAAGCAATTTGCTGGGTATGTTGATGTTGATGTCAAACATGGAAGGAGCCTCTTCTACTACTTTGTGGAGGCTGAGCAAGACCCTGACAAGAAGCCTCTCACACTTTGGCTCAATGGAGGCCCTGGATGTTCTTCCGTTGGAGGAGGTGCTTTTACTGAATTGGGGCCCTTTTATCCTAATGGTGATGGACTTGGTCTCCGAAGAAATTCCATGTCTTGGAATAAAGCATCCAATCTCATTTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACATCTTCAGATTACAATACTGGAGATCTCTCCACTGCCAATGATATGTACTTGTTCATGTTGAAATGGTACGAGAAGTTTCCATCATACAGAACAAGGGAGCTGTTCCTCACTGGAGAAAGCTATGCAGGACACTATGTACCTCAATTAACTAATGTTCTCTTGGACCATAATGCTGGTTCAACTGGTTTCAAATTCAACATCAAAGGAGTTGCTATTGGAAACCCACTTTTGAGACTTGATCGGGATGCACCAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTGCCATTATGAATGATTGTAATTTTGATGACTATTCCTATGAAAGTCCTCACAACGTTTCTAGTTCGTGCAACAATGCCATATATGAAGCAAATCTCATTGTTGGCAACTACATAAACAATTATGATGTGATTCTAGATGTTTGTTATCCATCCATAGCGGAACAAGAACTGAGATTGAAAAAGATGGCAACAAAAATAAGTGTAGGTGTTGATGTGTGTTTGAGTCTAGAAAGACGGTTTTACTTCAATCTCCCAGAGGTTCAGAAGGCTCTTCATGCAAACCGTACAAACCTTCCTTATAGGTGGTCCATGTGTAGTAATGTTGTAAACTACAGTGACACTGATGGTAACATCAACATCCTTCCAATTCTCAAAAGAATAGTCCAAAACCATATCCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTATTGGGATCTCGAACACTAATGCGTGAACTAGCTAATGAATTGCATTACAAGATTACAGTCCCATATGGGGCCTGGTTCCACAAAGGGCAGGTTGGAGGTTGGGTGACTGAGTATGGAAATTTGTTAACTTTTGCAACTGTAAGGGGTGCTGCTCATATGGTACCTTATTCTCAACCTTCAAGAGCACTGCATCTGTTCAGTTCATTTGTGCGTGGTAGGAGGTTACCCAACACAACACATTCTTCCCTTGATGATTGA 1431 0.4235 MGYMGRCWLVGVIIVVWCAILLGTAGVRGYPAEDLVVRLPGQPNVGFKQFAGYVDVDVKHGRSLFYYFVEAEQDPDKKPLTLWLNGGPGCSSVGGGAFTELGPFYPNGDGLGLRRNSMSWNKASNLIFVESPAGVGWSYSNTSSDYNTGDLSTANDMYLFMLKWYEKFPSYRTRELFLTGESYAGHYVPQLTNVLLDHNAGSTGFKFNIKGVAIGNPLLRLDRDAPATYEYFWSHGMISDEIGLAIMNDCNFDDYSYESPHNVSSSCNNAIYEANLIVGNYINNYDVILDVCYPSIAEQELRLKKMATKISVGVDVCLSLERRFYFNLPEVQKALHANRTNLPYRWSMCSNVVNYSDTDGNINILPILKRIVQNHIPVWVFSGDQDSVVPLLGSRTLMRELANELHYKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYSQPSRALHLFSSFVRGRRLPNTTHSSLDD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02050 476 FunFam Carboxypeptidase 30 294 - -
Vimu1g02050 476 Pfam Serine carboxypeptidase 41 463 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 450 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 SUPERFAMILY alpha/beta-Hydrolases 37 466 IPR029058 -
Vimu1g02050 476 Gene3D - 317 354 - -
Vimu1g02050 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vimu1g02050 476 FunFam Carboxypeptidase 364 463 - -
Vimu1g02050 476 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Vimu1g02050 476 Gene3D - 364 463 - -
Vimu1g02050 476 Gene3D alpha/beta hydrolase 31 293 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02050 Vimu-Chr1 28492146 28499799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02050 323 466 Calmodulin-binding Proteins AT2G22960 25.694 2.12e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02050 K16297 - gmx:100801752 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02050 1 28492146 28499799 Vimu1g02050 1 28492146 28499799 ECH