Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02045 ATGAAATGGTGTGGCTCTGATGGGGATAATAATGTTCTTGTTATTGAACTTCTGGGACCAAGTCTTGAAGATCTCTTTTACTTCTGTGGCAATAAATTATCTCTCAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACACGGATAGAATATTTACATTCTAAAGGATTTTTGCATAGAGACATCAAACCCGATAACTTCCTTATGGGTCTCGGAAAGAAAGCAAATCAGCTTGTTCTTACATTGATAAATTCCTCCAGAGAAAACAAAGGTTTAACAGGGACTGCCCGTTATGCAAGTTACAATACTCACTCAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCTCTTGGCTATGTTTTAATGTACTTTTTAAGAGGAAGTCTTCCATGGCAAGGTTTGCAAGCTGCCACCAAAAGACAAAAGTATGATAAAATTTGCAAAAAGAAGTTATCAACACCCATTGAGGTACTTTGCAAGTCATATCCTGTGGAGTTTGCCTCTTACTTTCATTATTGTCTCTCTTTGACATTTGATCAACGACCAGATTATGGTCTTTTGAAGCGTTTGTTTCGTAATCTGTTCACTCGTGCAGGATATGATTCTGACTATTTATTTGATTGGACTATTCTAAAATATCAACAGATGCAACAACAGAAGACACAAAGTCAACCAAATGCTCCACTAGCTGTGCCTACTAGTCTTGAACCACTGGAGGAGGATAATAATAAAGGAGTCAATGGTTCAACTCAACTTGATGCAGAAAAACCATTAATCAGTGTTGATCATCAACGGACTGTGAACAATGGTTCATCTATGCCCACTGCGATGCCCGGAGTCTCCACAGAAAATGTCTCAAAACCAGTAAGGCTTCGCCGAGTTTCATCAACAAAACAATAG 903 0.3854 MKWCGSDGDNNVLVIELLGPSLEDLFYFCGNKLSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQLVLTLINSSRENKGLTGTARYASYNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAATKRQKYDKICKKKLSTPIEVLCKSYPVEFASYFHYCLSLTFDQRPDYGLLKRLFRNLFTRAGYDSDYLFDWTILKYQQMQQQKTQSQPNAPLAVPTSLEPLEEDNNKGVNGSTQLDAEKPLISVDHQRTVNNGSSMPTAMPGVSTENVSKPVRLRRVSSTKQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02045 300 SUPERFAMILY Protein kinase-like (PK-like) 3 209 IPR011009 -
Vimu1g02045 300 MobiDBLite consensus disorder prediction 263 300 - -
Vimu1g02045 300 Pfam Protein kinase domain 9 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02045 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Vimu1g02045 300 MobiDBLite consensus disorder prediction 238 300 - -
Vimu1g02045 300 Gene3D Transferase(Phosphotransferase) domain 1 1 248 - -
Vimu1g02045 300 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02045 300 PANTHER CASEIN KINASE-RELATED 3 251 - -
Vimu1g02045 300 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02045 Vimu-Chr1 28380584 28394277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02045 33 186 MAP Kinase Kinase Kinase AT1G62400 31.847 4.55e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu1g02045 Pkinase 2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02045 K08960 - gmx:100782913 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02742 10 38782660 38788963 Vimu1g02045 1 28380584 28394277 PCT
Vimu10g02705 10 38474826 38478938 Vimu1g02045 1 28380584 28394277 PCT