Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02043 ATGATCAAAATTTTCATGAACATGCCTTTCAAGAACCATTTTCTGGTGTTCATCATGACGGTTCTTTTTTTCATTTCTAATGTTGAAGCACAAAACAATGACGCAGATAGCATGCAAGATCTTCCTCAACCTGTTCGTCCAAGCAAGATGGTTGTAATAGTGGCCCTCTCAATATTGTTCACTATATCATTTCTCTTACTTGTCTACATAAGGTTCCGCAGAAGCATCCCTCTTGAACTTACCAATAGAAGGAGCCCTGATTCACCAAATTTTCAAGAACAAACACAATCAAGATCAAGACGTTCAGGGATAGACCAAAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTAAAGGGGTCCAAACAAGGCCTAGAATGCACAGTTTGCTTGTCACAGTTTGAGGACACTGAGATGCTTAGGCTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTAGAAAGTCACTCTACATGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAG 540 0.4019 MIKIFMNMPFKNHFLVFIMTVLFFISNVEAQNNDADSMQDLPQPVRPSKMVVIVALSILFTISFLLLVYIRFRRSIPLELTNRRSPDSPNFQEQTQSRSRRSGIDQKVIEALPFFMFSSLKGSKQGLECTVCLSQFEDTEMLRLLPKCKHAFHMNCIDKWLESHSTCPLCRNNIDPLDIK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02043 180 CDD RING-H2_EL5-like 128 171 - -
Vimu1g02043 180 FunFam RING-H2 finger protein ATL43 104 178 - -
Vimu1g02043 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 179 - -
Vimu1g02043 180 SMART ring_2 129 170 IPR001841 -
Vimu1g02043 180 MobiDBLite consensus disorder prediction 83 102 - -
Vimu1g02043 180 SUPERFAMILY RING/U-box 113 176 - -
Vimu1g02043 180 Pfam Ring finger domain 128 171 IPR001841 -
Vimu1g02043 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 177 IPR013083 -
Vimu1g02043 180 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02043 Vimu-Chr1 28325847 28326703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02043 46 178 C3H Transcription Factor Family AT2G20030 52.941 3.60e-44 149