Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02007 ATGTTCGCTGAGACAGAACTTCTCTTCCCATATTTTCGAAATTTCTCTCAAGAGTTTCAACAACTTGAGGAGTACTGCATGACCCAAAAGTCCTGTGCTTCAATGAATGACCTCGTTCAAACTTCTGCAATCTCAGAATATGATTTGTTAATAGAGGGAGATCTGTTCAAAGCACCTGAACCTATTCTTGAAGAACCAGCAATAGACCTCGATCCTGTGCAAGCAGCCATCTCAATGATATCTTGCGGGGAGGATGTCCCCTCACAGGGTCTAAAATCATCAGATATTAATATACTTCAAAATGAACAGCTTCTGAGTGAGGTATTCTACGAGTGCAAAAAAGATCTCTTAGAAAAGACAGTGATAGAGTCACCACTCAATGATATTATGGAAATCAAGGTTCCACCACTGAACATTGAGGATAATTCAATTGAAGTAAACAAATCACTTCTACACACTACTCTACCAAAGAGTATCAGTTCAGGAAGTCTGAGTTCAATGGACTGGATGCATGGAGCTGCAATGAGGCCAACTTTTCTGGATTTTCCAGGATTAGATTTCAATGCAGTTTATGGCATGCGGAGAGCATTTAGCGAAGGAGATATAAAGACTCTTAATACTGGCAACACGAGCTATTGCCAATCTCCACAGGAGAGACCTTTGTTTCTAGGCAACTGCACTAGTGAAGAACGTCAAGAAAAGCTCTCCAGATACAGAAACAAGAAGACAAAGAGAAATTTTGGGAGGAAAATTAAGTATGCTTGCAGGAAGGCACTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAAGACAGAAGAGTTAGATGTGAAGAGGTAA 843 0.4057 MFAETELLFPYFRNFSQEFQQLEEYCMTQKSCASMNDLVQTSAISEYDLLIEGDLFKAPEPILEEPAIDLDPVQAAISMISCGEDVPSQGLKSSDINILQNEQLLSEVFYECKKDLLEKTVIESPLNDIMEIKVPPLNIEDNSIEVNKSLLHTTLPKSISSGSLSSMDWMHGAAMRPTFLDFPGLDFNAVYGMRRAFSEGDIKTLNTGNTSYCQSPQERPLFLGNCTSEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEELDVKR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02007 280 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Vimu1g02007 280 Pfam CCT motif 231 273 IPR010402 GO:0005515
Vimu1g02007 280 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 157 273 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02007 Vimu-Chr1 27350252 27353542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02007 227 277 C2C2-CO-like Transcription Factor Family AT5G57660 49.020 1.02e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g02007 CCT 1.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02007 - - aprc:113853022 451.44