Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01977 ATGGCACCCAGTTTTGATTGCTTTTCAAGCCTTCTCTGTGCGGAAGATAATATTATTTTTGACGAAAATGATCGGGGAGGTTTGGTGGAGGAGTTGGAGGACACGTGGGAGCATCCTATATATGATCGAAATCATAGTCAAATTGAGAACTTGGATGTCCAATATGTGTCGTTTCCATTGCCGAGTGAGGAGTGTTTGAGACTAATGATGGAAACAGAATTGCATCACTTGCCTAATGGTGATTACGTTAATAGGCTGAGGAGTGGGGATTTGGACATTGGGGCCAGAACAGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCACTTTGGTTTTGGACCTCTCTGTGCGTATTTATCTATAAATTACTTGGACCGCTTCCTCTCTGTTTATGAATTACCAAAGCAACGAGTTTGGACAATGAAATTGTTGGCTGTAGGTTGCATATCTTTGGCAGCCAAAATGGAAGAGACTGATGTCCCTACATCTCTTGATTTGCAGGTGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATTCAGAGAATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCAATTACCCCATTTTCCTTCATTGACTATTTCCTTCAAAAGATCAAATGTGATGGTGAAACTTCAATTGGAGCTTCAATTTTGCAATCCTCCGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATAGCTGTGGTGGGGGACGGCCAAACAGTTCAAATAGAGAAAGCAAGTTCTGATCTGATTCAGCCTGTAGAAAAGGAGAGGGTGTTGAAGTGTGTTAAAATGATCCAAGCCCTGTCATCAAACAATGGTTCTGCTAAGGATTTCATTCCTTCTGTTTCTGTACCTAGCGTGCCTGAAAGCCCAATAGGGGTGTTGAACAATGCATGTTTCAGCTACAAAAGTGATGAACCAAATGCTGCTCCTTGTGCAAATTCTTCACATACTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 1071 0.4202 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELEDTWEHPIYDRNHSQIENLDVQYVSFPLPSEECLRLMMETELHHLPNGDYVNRLRSGDLDIGARTEAIDWIEKVREHFGFGPLCAYLSINYLDRFLSVYELPKQRVWTMKLLAVGCISLAAKMEETDVPTSLDLQVGESKYIFEAKTIQRMELLVLNTLKWRMQAITPFSFIDYFLQKIKCDGETSIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAIAVVGDGQTVQIEKASSDLIQPVEKERVLKCVKMIQALSSNNGSAKDFIPSVSVPSVPESPIGVLNNACFSYKSDEPNAAPCANSSHTDTPDAKRRKLDKTFGE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01977 356 CDD CYCLIN_AtCycD-like_rpt2 198 287 - -
Vimu1g01977 356 SMART cyclin_7 101 189 IPR013763 -
Vimu1g01977 356 Gene3D - 67 286 - -
Vimu1g01977 356 SUPERFAMILY Cyclin-like 180 288 IPR036915 -
Vimu1g01977 356 MobiDBLite consensus disorder prediction 341 356 - -
Vimu1g01977 356 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Vimu1g01977 356 SUPERFAMILY Cyclin-like 58 195 IPR036915 -
Vimu1g01977 356 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vimu1g01977 356 FunFam D6-type cyclin 192 285 - -
Vimu1g01977 356 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Vimu1g01977 356 PANTHER CYCLINS 67 291 IPR039361 -
Vimu1g01977 356 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Vimu1g01977 356 SMART Cyclin_C_2 198 313 IPR004367 -
Vimu1g01977 356 MobiDBLite consensus disorder prediction 328 356 - -
Vimu1g01977 356 Gene3D - 79 196 - -
Vimu1g01977 356 FunFam D2/4-type cyclin 79 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01977 Vimu-Chr1 26457207 26459224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01977 26 335 Core Cell Cycle Gene Families AT2G22490 47.170 1.79e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01977 K18810 - gmx:100803873 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01977 1 26457207 26459224 Vimu1g01977 1 26457207 26459224 ECH