Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01971 ATGCCCAACGGTTCGCTCCACGACCTTCTTCACTCCACCAAAACGGTTGGGCCTCCCGGTTGGACAGCGCGTGTCCGGTTCGCGGTGCACGTCGCGAAAGCCATTCGGTTTTTGCACTCGTCTGAACCGCCCGTTATTCACCGTGATATTAAATCGTCCAACGTGTTAATCGACGATAAGTGGAAAGCGCGACTCGGTGACTTCGGACTCGCGTTTCGAGGACACATGGCGGATTCTCGCGTGCCGCCAGCAGGGACGTTAGGGTACCTCGACCCCTGCTATCTTGCGCCGGGGGACTTGAGTCCCAAGAGCGATGTCTTCAGTTTTGGAATCTTGCTGCTGGAGATAGCGAGTGGAAGGCACGCGATTGACGTGAGGCACAGTCCGCCGTCGGTGTTGGATTGGGCGGTGCCGTTGGTCCGCCGTGGCCAGTTTCGGGATATTTGTGACCCGAGGATCGGGGCGCCGCCTAACATGGCAGCGTTCCACAGGATGATGGTGCTAGCCGCGAGGTGCGTGACGTCAAAGGTGGAGAGCCGGCCGACGATTGCGGAGGTGGTGGAGTGTCTGATAGCGGTAAAGAAGAATTTTGACGCATCGCTGGTGTGGATGAGAATGATACGGCGCGTGGTAAAGGCGCGTGGTGTTGATTGGGACAGGAGTGACGAATATATGAGAATAGTTAAAGGTGGGAGTAGAAACAGTAGAAGGAATGGGAAGGTATCTAGCATGTTGGGTGTACAGTATGAGAATGGACCCGCAAATCACACGGTTAGGTCAAGATCCGTTGGTTCTGGTTTTTTCGGGGAAATGAAAATTAACTCGGTTTTGGAACGGTACCCTAACCAATTGGGGTTCAGGTATAGGAAGGTAAGGCTAAAGAGATCGATGTCTATGGGGCTTTTGAAACATTATGGTAATGAATCAAATACGTGTCATGAGAGGCATAACGATACTCATAGCAATGATTACGATAGAGTGAATTCCACAGAGATGGAACTTTCAAAGTTGGGTATTGTGGATAAGAATTTGGACTAG 1038 0.5183 MPNGSLHDLLHSTKTVGPPGWTARVRFAVHVAKAIRFLHSSEPPVIHRDIKSSNVLIDDKWKARLGDFGLAFRGHMADSRVPPAGTLGYLDPCYLAPGDLSPKSDVFSFGILLLEIASGRHAIDVRHSPPSVLDWAVPLVRRGQFRDICDPRIGAPPNMAAFHRMMVLAARCVTSKVESRPTIAEVVECLIAVKKNFDASLVWMRMIRRVVKARGVDWDRSDEYMRIVKGGSRNSRRNGKVSSMLGVQYENGPANHTVRSRSVGSGFFGEMKINSVLERYPNQLGFRYRKVRLKRSMSMGLLKHYGNESNTCHERHNDTHSNDYDRVNSTEMELSKLGIVDKNLD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01971 345 PANTHER OS01G0253100 PROTEIN 1 196 - -
Vimu1g01971 345 Pfam Protein kinase domain 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01971 345 Gene3D Transferase(Phosphotransferase) domain 1 1 207 - -
Vimu1g01971 345 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01971 345 SUPERFAMILY Protein kinase-like (PK-like) 1 189 IPR011009 -
Vimu1g01971 345 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01971 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01971 Vimu-Chr1 26274289 26275720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01971 1 190 Receptor kinase-like Gene Family AT3G59420 45.178 8.20e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu1g01971 Pkinase 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01971 - - vun:114194010 609.757