Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01968 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTGGCAAGTTACGACTCGCTTGGAAACTCGGCGGCTCGCTCCAAAGTCGGCGGCGAGGGACGGAAGGGCGCGTTCGGCGCCGCCGCGGTACGCTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGACACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAATTTTCATCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCGCCGCCGCCGCTGCACCACCACCATCAGTTCTCCCCGTACTACCATCACCGAGTCCCGCAGCACCCTTCCGCCAGCGGCTACCTTCACCACCATCTCGCCACACCTCCAATGGCGCAGCATCGCCCGCTCGCCCTCCCGGCGGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGAGGTGGCGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCCGAGACAAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGATTACAACAGTAGAAGAAGGTGGTCATACATTCCCTTTCTCTTTTTCTGTATCCGTTTGATCATATTTGGGCTGAATGGATCGATGAACACTGTTGGCAGCAGAGTGGTACCATCACTGTTCTGTTCTATGGAGTTGTTGTAA 912 0.591 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGGEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPSASGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLDYNSRRRWSYIPFLFFCIRLIIFGLNGSMNTVGSRVVPSLFCSMELL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01968 303 MobiDBLite consensus disorder prediction 165 199 - -
Vimu1g01968 303 FunFam Zinc-finger homeodomain protein 2 191 258 - -
Vimu1g01968 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Vimu1g01968 303 Gene3D - 182 257 - -
Vimu1g01968 303 MobiDBLite consensus disorder prediction 1 39 - -
Vimu1g01968 303 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Vimu1g01968 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 256 - -
Vimu1g01968 303 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Vimu1g01968 303 SUPERFAMILY Homeodomain-like 183 255 IPR009057 -
Vimu1g01968 303 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01968 Vimu-Chr1 26182408 26187506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01968 1 264 ZF-HD Transcription Factor Family AT4G24660 52.453 7.65e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu1g01968 ZF-HD_dimer 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01968 - - gmx:100776421 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01968 1 26182408 26187506 Vimu1g01968 1 26182408 26187506 ECH
Vimu1g01968 1 26182408 26187506 Vimu10g02620 10 37580938 37582116 PCT