Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01953 GTGTTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTTTTCTTCCATTTAAAGGCGATTCACAGGAAGAAGTTTTTGAGGAAATAAAAAATTTCAAACTAGATTTCCAAACGGGGGTGTGGGAATCGATATCTAAACCAGCTCGAGATCTTGTTGGGAGAATGTTGACTAGGGATGTTTCAGCAAGGATAACAGCCGATGAAGTACTGAGTAAGTTTTTGATAGATATATTATCGAGAGCTTGCCTGCTTTATCTTTTTCCCTCGACTATTAACATACCAAAGATTTTATTCAATTTGATTTTTTGTTGTTTTTAA 354 0.3729 VLLGRYSEKVDIWSSGVLLHALLVGFLPFKGDSQEEVFEEIKNFKLDFQTGVWESISKPARDLVGRMLTRDVSARITADEVLSKFLIDILSRACLLYLFPSTINIPKILFNLIFCCF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01953 117 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vimu1g01953 117 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 84 - -
Vimu1g01953 117 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01953 117 SUPERFAMILY Protein kinase-like (PK-like) 4 91 IPR011009 -
Vimu1g01953 117 Pfam Protein kinase domain 5 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01953 Vimu-Chr1 25722848 25723201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01953 1 82 EF-hand Containing Proteins AT4G04740 51.220 3.30e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu1g01953 Pkinase 6.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01953 - - gmx:100809977 153.295