Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01952 ATGCGATCACCGAATGAGATGAAAAAGAAACGAAAGGAAAGCGAGGCCAGTGAGCGGTCGAACTGGCCGGAGGTTTCGAGGTCGCATTACTCGCTGGAGCGTGGTTCGAGGTTTAACAAACGGTGCAGGGAAGACGGCGTGGCCACGGTTCCCACTCTCGGCGCGTCGTCACTTTTGACTGCGGCGCGGGGACTGAAGCGGAAAATAGGGTGCATTGACGATGCCACGCGGATGGGGAGGAGCGTGAGGATCGAGGACGATTACGTGATCGGAGGGAGCACGATCGGGCAGGGGAAGTTCGGGTCGGTGACGGTTTGCCGCGCACGTGCGGGGGGCGTGGAGTACGCGTGCAAGACGCTGAGGAAGGGGGAGGAGACGGTGCACCGCGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCTGGGGTTGTAACTCTGAAAGCGGTGTATGAGGATGCGGAGTGTTGGCACCTTGTGATGGAGCTGTGCTCCGGGGGAAGGTTGGTTGATAAGATGAGGGAGGGGCCGTGTTCGGAACACTTGGCCGCTGGGATACTGAAGGAGGTAATGATGGTGGTTAAGTATTGTCATGATATGGGTGTGGTGCATAGGGATATTAAGCCTGAAAATGTTCTGATTACTGGAACTGGGAAGATAAAGCTCGCTGATTTTGGCCTCGCCATCCGAATTTGTGAGGGTAAGTTGATACTTGATATAGATGTTTGA 726 0.5579 MRSPNEMKKKRKESEASERSNWPEVSRSHYSLERGSRFNKRCREDGVATVPTLGASSLLTAARGLKRKIGCIDDATRMGRSVRIEDDYVIGGSTIGQGKFGSVTVCRARAGGVEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLKAVYEDAECWHLVMELCSGGRLVDKMREGPCSEHLAAGILKEVMMVVKYCHDMGVVHRDIKPENVLITGTGKIKLADFGLAIRICEGKLILDIDV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01952 241 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vimu1g01952 241 Pfam Protein kinase domain 93 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01952 241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vimu1g01952 241 MobiDBLite consensus disorder prediction 1 29 - -
Vimu1g01952 241 Gene3D Transferase(Phosphotransferase) domain 1 81 236 - -
Vimu1g01952 241 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 228 - -
Vimu1g01952 241 ProSiteProfiles Protein kinase domain profile. 89 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01952 241 SUPERFAMILY Protein kinase-like (PK-like) 84 233 IPR011009 -
Vimu1g01952 241 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g01952 241 SMART serkin_6 89 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01952 Vimu-Chr1 25720870 25721595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01952 73 239 EF-hand Containing Proteins AT4G04720 41.573 2.54e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu1g01952 Pkinase 7.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01952 - - gmx:100809977 381.333