Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01940 ATGGGCATCCACATGGAATGCCCTGCACCTCCACCTGCACCGCGGATCATGAATCTCTATCATGATCCTGCACGTTTTTGCCTTCTTATCTTCCTTCTCGTGCCGCCGGTCACGGCACAGTTTCAAAACTCGCCTCCGTCACCGTCGCAGTTGGATCCTTTCACGAGACTGAGGTTCGACAAGACCATGGCTGCGGTTCTAGTGATCCTCGTCGTGGTCTTCTTCGCTTTGGGATTCGTTTCCATCTACACGCGCCAATGCGCCGAGCGCCGGATCAGGGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGATCGGCGGCAGCATCATGGGCTCGACCGGGCGACCGTCGACACGTTCCCGACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATTGGGAAGGCCACGCTGGAATGCGCTGTGTGCCTCAACGAGTTTCGCGACGACGAAACTTTGCGTTTGATCCCCAAATGCTGCCACGTGTTCCATCCCGATTGCATCGATGCCTGGTTGGTGAATCACTCCACTTGTCCCGTTTGCCGCGCCAACCTCTCGCCGAAACCCGAGGACGCGCTTCCTCCCGTTGAGATTCACATTCCGGATTCGGCCCGGCCCAACGGAACAAACGCAGAGCCCGATTATGATCCGAATTACATCAATCCTGTCCGTGAAGGTGAAGGTGAAGGTGAACGAAACAGAATAGTTACGGAACCTCTTAGTTTAGATGATCCGAACCTGGTCCGTCCCGTTCGGTCTAGATCGACCGGTTTTGGAGTTTCAAGGCTGTTTCCGCGCTCCCATTCAACGGGTCGTTCTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCAGAGGATGTGAGGAACCAGCTCATGAGTTCTGGGACGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGGAGCGGCAGAGTAGTGGAAGGACGGGTTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCGATATGAGCGATTCGGTGGGGATGGGCGTTTGGACCGGTGGGGGTTTATGTGGACCCCACCGTTTTGGGGCAGAACCGGTTCGGGGAGATCAGCAAAGTCAACGAAGGCGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCTTTTATTTACCAGAGATTGA 1170 0.5658 MGIHMECPAPPPAPRIMNLYHDPARFCLLIFLLVPPVTAQFQNSPPSPSQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMDRRQHHGLDRATVDTFPTFVYSEVKALKIGKATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLSPKPEDALPPVEIHIPDSARPNGTNAEPDYDPNYINPVREGEGEGERNRIVTEPLSLDDPNLVRPVRSRSTGFGVSRLFPRSHSTGRSLVRPGEDCERFTLRLPEDVRNQLMSSGTLNRTKSCGVTWERQSSGRTGYRTRSVGRSYLRYERFGGDGRLDRWGFMWTPPFWGRTGSGRSAKSTKAKDEVDVGERSSDLLFTRD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01940 389 PANTHER RING FINGER DOMAIN-CONTAINING 37 188 - -
Vimu1g01940 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 190 IPR013083 -
Vimu1g01940 389 SMART ring_2 142 183 IPR001841 -
Vimu1g01940 389 MobiDBLite consensus disorder prediction 360 389 - -
Vimu1g01940 389 MobiDBLite consensus disorder prediction 366 389 - -
Vimu1g01940 389 CDD RING-H2_EL5-like 141 184 - -
Vimu1g01940 389 MobiDBLite consensus disorder prediction 203 233 - -
Vimu1g01940 389 SUPERFAMILY RING/U-box 121 191 - -
Vimu1g01940 389 FunFam E3 ubiquitin-protein ligase ATL6 84 190 - -
Vimu1g01940 389 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vimu1g01940 389 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01940 Vimu-Chr1 25372730 25374754 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01940 28 380 Rapid Response to Elicitors AT3G05200 39.623 7.99e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01940 K10664 - gmx:100815982 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01940 1 25372730 25374754 Vimu1g01940 1 25372730 25374754 ECH
Vimu1g01940 1 25372730 25374754 Vimu10g02569 10 37054990 37057176 PCT