Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01936 ATGTCACCGCCAGTAACCGGTCAACCGGTAACTCCGGCATTAGAACCCGACAGCAACAAATCCGTGATCGTCATCATGGTCATCATCGCCATAATGTTCCTCATCTCAGCCTTAATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCGCTGGCACGTGGCACACTCGACCTCGCCGCATCCACTGGCGCAACCGGTAACCCGTCGTCGCAAAGCGAACCCAGCGGTCTCAGCCAGGCCACTATAGAAACCTTCCCCATATTCCTCTACTCCGACGTGAAGAGTTTCAAAATCGGAAAAGACACTTTAGCATGCGCTGTGTGCTTGAGCGAGTTCCAAGACCACGATACCCTTCGCATGATCCCCAAATGTTGCCACGTGTACCACCCCAATTGCATCGACGTGTGGTTAGCTTCTCACACCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCACAACCTGAAGACTTAGACACGAACACGAACATGCTACCCATGTTGTCCATTCAGGTACCCGATGAACATGAAGATGAAGACGAAAGTGGTGAACATGAACACGAGAGTGTTGTCAGTGAGGAAGGGAAAAGGATTCACTCGTTGCATCAGAGTCGTCCATCACGGTCGAGATCCACTGGGTTCTTATCCTCTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCCAGAGGAGAACTATGAGAGGTTTACGCTAAGGTTACCGGAGGAGGTACAAAGCCAGATGATGAACTCGAGACTTAAGCGTGCGAATAGTTGTGCATGCTTTACAAGAATGAGCAGTGGCACGTGGGGGTATAGAACGAGAAGCGTGGGAAGTGGACGTGGAAGAGGGTGTGTGCAGTACGAGAGGTTCAATGGGGTTTCACTTTGA 900 0.5156 MSPPVTGQPVTPALEPDSNKSVIVIMVIIAIMFLISALISLYSRKCSDRQALARGTLDLAASTGATGNPSSQSEPSGLSQATIETFPIFLYSDVKSFKIGKDTLACAVCLSEFQDHDTLRMIPKCCHVYHPNCIDVWLASHTTCPVCRANLVPQPEDLDTNTNMLPMLSIQVPDEHEDEDESGEHEHESVVSEEGKRIHSLHQSRPSRSRSTGFLSSLLFPRSNSMGQLAQPEENYERFTLRLPEEVQSQMMNSRLKRANSCACFTRMSSGTWGYRTRSVGSGRGRGCVQYERFNGVSL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01936 299 CDD RING-H2_EL5-like 106 148 - -
Vimu1g01936 299 SMART ring_2 106 147 IPR001841 -
Vimu1g01936 299 MobiDBLite consensus disorder prediction 173 212 - -
Vimu1g01936 299 MobiDBLite consensus disorder prediction 183 201 - -
Vimu1g01936 299 FunFam E3 ubiquitin-protein ligase ATL6 67 154 - -
Vimu1g01936 299 SUPERFAMILY RING/U-box 105 158 - -
Vimu1g01936 299 Pfam Ring finger domain 105 148 IPR001841 -
Vimu1g01936 299 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vimu1g01936 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Vimu1g01936 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01936 Vimu-Chr1 25226744 25227688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01936 21 274 Rapid Response to Elicitors AT3G05200 37.931 7.28e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01936 K10664 - gmx:100814384 397.127