Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01933 ATGGCCCTAGAGGCCGTGGTTTTCCCGCAAGATCCATTCAGTTACCCTTGCAACAAAGACTACTTCTACTCGCTGTTGCAAAACAATTTTCAAGAAGCAGAAAACAAAGCCTTTCTAGGCATCATCACCAACAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCTGCTTTGCAAAATATCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCCTTTCCTCCTCCTCCTCCTCCCTCCGAACCCACCCCCGCCCGCCGCAAACGCCGCCGCACCAAGACCACCAAGAACAAGGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGAAAACAGATGAACGAGTACCTCGCCGTTCTAAGATCCCTGATGCCACCCTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCCATCAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAGAACGAAGGAAAATGGCGGTGGCTTCTCTGACTCATCATCACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTACTCGACACGTGCGACACAGAACGGCAGAGGGTACCCTAGCACGTGCGAAGCACGGAGTCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTTGTGGATGGCCATGCCAACATAAAGATACTCTCCAAAAAACAACCGGGCTTGCTTCTTAAGATGGTTGTTGGCCTTCAAACTCTCGCCTTCACCATTCTCCACCTTAACGTTACCACTGTCGACGATATGGTCCTCACCTCGGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGATGAACACAGTGGATGAAATTGCAGGTGCGGTGCATGAATTATCCCGCAGGATTGAGGAGGAAGGTGTTTTGAGGTGA 960 0.5073 MALEAVVFPQDPFSYPCNKDYFYSLLQNNFQEAENKAFLGIITNNNIDHTLHANWDSSSPSALQNIKDQWDSHSSPEPCTVDQSLPAAFPPPPPPSEPTPARRKRRRTKTTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQQRTKENGGGFSDSSSPFAEFFMFPQYSTRATQNGRGYPSTCEARSHSWAVADIEVTLVDGHANIKILSKKQPGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTSVSVKVEEGCQMNTVDEIAGAVHELSRRIEEEGVLR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01933 319 MobiDBLite consensus disorder prediction 57 115 - -
Vimu1g01933 319 FunFam Basic helix-loop-helix transcription factor 110 185 - -
Vimu1g01933 319 PANTHER MAX DIMERIZATION, MAD 57 315 - -
Vimu1g01933 319 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Vimu1g01933 319 Gene3D - 109 186 IPR036638 GO:0046983
Vimu1g01933 319 MobiDBLite consensus disorder prediction 57 81 - -
Vimu1g01933 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
Vimu1g01933 319 CDD bHLH_AtFAMA_like 122 195 - -
Vimu1g01933 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Vimu1g01933 319 SMART finulus 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01933 Vimu-Chr1 25106848 25108345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01933 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.161 7.74e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g01933 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01933 - - gmx:100797856 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01933 1 25106848 25108345 Vimu1g01933 1 25106848 25108345 ECH
Vimu1g01933 1 25106848 25108345 Vimu10g02482 10 35969917 35971068 PCT