Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01931 ATGGCCAACAAATTCAGAAAACTCTTCCCAGATGAAACAACCTCAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGTATGCCCTTACAACTGTTACACTAACCAAGACTACTTCTTATCTCCACCACCACCATTTGTTTCACCATCAACACAAGTTAACCACATATCCTCCTATTTGATCATCATCGGTACTCTCTTTGCTGTCATTTTTGTTGTCATAGGTTTCTACGTAATCAAAGTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCTCAACGGATCCCTTCCTTCTCAATCAGACACCACAACGGAGGAGTTTCTCCATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGCAACGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTCTGTTTGAACGAGTTCCAAGAGGAAGAGACCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATCGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGTGCAGGTATTCTCTCTAACAGTGTTACTTCTGAAGCACCCGTGTCGAATTTGGAGCAAGAAAATGCGAATTTGGGAAGAAATCAAGACACCCTTTTGGAAAATTCAAGGAATGAAGGCTTGTCAAACAGCAACACGGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACTCAGAACCATCACGTTCTGGATATTGAGATTCACACAGAAATGCGGTCTGTTTCAACCACAGAATCTGAAATCCATCATGTTGGTGATGATCATAAGCACGACGAAACACACTTGCAAGCTGTTAATCGACGGAAGCAAGAGCAAGATGTCGATAACCACCCAAAAACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTACATTTAAGCCCGGTATCGATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTCTAAACCCTATGCTCCATTCATCCCTGTTAGAATTTTCAATCTGTTAG 1128 0.4371 MANKFRKLFPDETTSNQTQTQDCYGLCDPVCPYNCYTNQDYFLSPPPPFVSPSTQVNHISSYLIIIGTLFAVIFVVIGFYVIKVKCYAAWCGWRLNGSLPSQSDTTTEEFLHENQVDHPVWLIATVGLQQSVINSITVCKYKSNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGILSNSVTSEAPVSNLEQENANLGRNQDTLLENSRNEGLSNSNTVAGESSEALELVDESNSKDRVHDQTQNHHVLDIEIHTEMRSVSTTESEIHHVGDDHKHDETHLQAVNRRKQEQDVDNHPKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNPMLHSSLLEFSIC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01931 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Vimu1g01931 375 PANTHER RING-H2 FINGER PROTEIN ATL16 44 335 IPR044600 GO:0016567|GO:0016740
Vimu1g01931 375 SMART ring_2 153 194 IPR001841 -
Vimu1g01931 375 FunFam RING-H2 finger protein ATL54 128 201 - -
Vimu1g01931 375 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Vimu1g01931 375 Coils Coil 209 229 - -
Vimu1g01931 375 SUPERFAMILY RING/U-box 143 200 - -
Vimu1g01931 375 CDD RING-H2_EL5-like 152 195 - -
Vimu1g01931 375 Pfam Ring finger domain 152 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01931 Vimu-Chr1 25065102 25068516 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01931 4 205 C3H Transcription Factor Family AT1G72220 46.522 1.38e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01931 - - gmx:100805705 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01931 1 25065102 25068516 Vimu1g01931 1 25065102 25068516 ECH