Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01907 ATGGCCAGCGCTCCTTCTCCACGCGAAGAGTTCGTGTACATGGCCAAGCTGGCGGAGCAAGCCGAGCGCTACGAGGAGATGGTGGAGTTCATGGAGAAGGTCTCTGCCGCCGCCGAGAACGAGGAACTCTCTGTCGAGGAGCGCAACCTCCTCTCCGTCGCTTACAAGAACGTCATCGGCGCCAGACGTGCCTCCTGGCGCATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGCAACGAGGACCACGTCGCCGTCATCCGCGACTACCGATCCAAGATCGAGAGCGAACTCTCCAACATCTGCGACGGAATCCTCAAGCTCCTCGACTCGCGCCTTGTTCCCTCCGCTGCCTCTGGTGACTCCAAGGTCTTTTACCTCAAAATGAAGGGCGACTACCACAGGTACCTCGCCGAGTTCAAGACCGGTGGCGACCGCAAAGAGGCCGCAGAGAGCACGCTCTCCGCCTACAAATCTGCACAGGACATTGCAAACTCTGAGCTGCCTCCAACTCACCCTATTAGGCTTGGCCTTGCTCTGAACTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCTGATCGGGCTTGCAGCCTTGCAAAACAGGCTTTTGACGAGGCAATTGCTGAATTGGATACACTGGGCGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTTCGTGATAACCTTACCCTCTGGACCTCTGACATGCAGGATGACGGTGCAGATGAAATTAAAGAAGCCGCGCCTAAAGGTGACGGGGAACAAAATTAA 786 0.5483 MASAPSPREEFVYMAKLAEQAERYEEMVEFMEKVSAAAENEELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAVIRDYRSKIESELSNICDGILKLLDSRLVPSAASGDSKVFYLKMKGDYHRYLAEFKTGGDRKEAAESTLSAYKSAQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKGDGEQN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01907 261 Coils Coil 14 41 - -
Vimu1g01907 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Vimu1g01907 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Vimu1g01907 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Vimu1g01907 261 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Vimu1g01907 261 PANTHER 14-3-3 PROTEIN 8 242 IPR000308 -
Vimu1g01907 261 Gene3D - 2 251 IPR036815 -
Vimu1g01907 261 FunFam 14-3-3 protein epsilon 4 251 - -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Vimu1g01907 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Vimu1g01907 261 PIRSF 14-3-3 2 250 IPR000308 -
Vimu1g01907 261 SMART 1433_4 8 251 IPR023410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01907 Vimu-Chr1 24118506 24120590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01907 6 261 14-3-3 family AT1G78300 89.105 1.42e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01907 K06630 - gmx:100794129 498.434