Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g01904 | ATGGAGCGCTATGAGATTCTCAAAGATATTGGCTCTGGGAATTTTGCTGTCGCCAAACTGGTTAGGGAAAACCGCACCAATGAGCTTTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCATGTTCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTATTAGATTCAAGGAGGTCTTGTTGACACCAACTCATCTAGCAATAGTAATGGAGTATGCTTCTGGAGGAGAACTATTTGAGAGGATATGCAATGCTGGTAGATTCAGTGAGGATGAGGCAAGATTTTTCTTTCAGCAACTGATATCTGGAGTCAGTTACTGTCATTCAATGCAAATATGTCATAGAGATCTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCTCCACGACTTAAAATTTGTGACTTTGGTTACTCAAAGTCATCAGTATTGCATTCTCAACCTAAGTCAACGGTAGGAACTCCAGCTTATATTGCACCTGAGGTTCTTACAAGGAAAGAATATGATGGAAAGATTGCAGATGTATGGTCTTGTGGAGTCACCTTATATGTGATGTTAGTTGGGGCTTATCCTTTTGAAGACCCTGCAGACCCAAGAAACTTCAAAAAAACCATTGGTAAGATACTTAGTGTCCAGTACTCAGTCCCAGATTATGTACGAGTTTCCATGGAATGTAGACATCTTCTATCACAAATATTTGTGGCAAGTCCTGAAAAGAGAATAACAATACCAGAAATTAAAAACCATCCATGGTTTTTAAGGAACTTACCCATAGAACTGATGGAAACTGGAAGCTGGCAAATAAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTGCTGTCTATAGTACAAGAGGCAAGAAAATCTCTTAATGTTCCAATTGTTGGTGGCCTTCTTAATGGGGGCACCATGGACCTGGATGACTTGGAGGCTGATGAAGAAGATCTTGAGGATGTAGAAACAAGTGGAGAATTTGTGTGCCCTCTTTGA | 1020 | 0.399 | MERYEILKDIGSGNFAVAKLVRENRTNELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPADPRNFKKTIGKILSVQYSVPDYVRVSMECRHLLSQIFVASPEKRITIPEIKNHPWFLRNLPIELMETGSWQINDVNNPSQSVEEVLSIVQEARKSLNVPIVGGLLNGGTMDLDDLEADEEDLEDVETSGEFVCPL | 339 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g01904 | 339 | FunFam | Serine/threonine-protein kinase SRK2E | 80 | 268 | - | - | |
Vimu1g01904 | 339 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524 | |
Vimu1g01904 | 339 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 280 | IPR011009 | - | |
Vimu1g01904 | 339 | ProSiteProfiles | Protein kinase domain profile. | 4 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu1g01904 | 339 | Gene3D | Transferase(Phosphotransferase) domain 1 | 80 | 267 | - | - | |
Vimu1g01904 | 339 | FunFam | Serine/threonine-protein kinase SAPK2 | 1 | 79 | - | - | |
Vimu1g01904 | 339 | CDD | STKc_SnRK2 | 3 | 259 | - | - | |
Vimu1g01904 | 339 | PANTHER | SERINE/THREONINE KINASE | 2 | 279 | - | - | |
Vimu1g01904 | 339 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 119 | 131 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu1g01904 | 339 | SMART | serkin_6 | 4 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu1g01904 | 339 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 79 | - | - | |
Vimu1g01904 | 339 | Pfam | Protein kinase domain | 4 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g01904 | Vimu-Chr1 | 24058732 | 24061574 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g01904 | 3 | 279 | CBL-interacting serine-threonine protein kinases | AT4G24400 | 41.608 | 1.28e-69 | 221 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CAMK_OST1L | Vimu1g01904 | Pkinase | 5.3e-72 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g01904 | K14498 | - | gmx:100798091 | 642.884 |