Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01888 ATGGTTAAAGCTTTCAAAGAAAAATTGGGTGAAGGAGGTTATGGCTCAGTGTTCAAGGGAAAGCTATCTAGTGGAACTTGCGTGGCAATAAAAATGATGGATAAATCAAAAGGTAATGGACATGATTTTATTAGTGAAGTTGCAACAATTGGAAGAATTCATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTCGAAGGTTCAAGACGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAGAATTATTTTTTCAAAAGATAGAAGTATAGATTTTGACTATAACAAAATATATCATATATCAATCGGGATAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAGATGCAAATTCTGCATTTTGATATAAAGCCCCACAATATTCTACTTGATGATAATTTCATTCCAAAGGTCTCTGATTTTGGATTGGCTAGACTCTTTCCGGTAGATAATAGCATTGACACCATGACAGCATTTTGGGATGCTTTTGATGGAAATGGCAAGCAGAAGGAAAAACTTAAATTCCCATCAGAGCATTCAAGTCAAATTTTCTTTCCTTCTTGGGTTTACGAAAACATAAGAGAAGAGAAGGATATAGAAATGGAAGATATCACAGAGGAGGAAAAGAAAATAGCAAAGAAGATGATATTATTGAATCCAAATGATCGTCCGTCCATGAACAAAGTGGTAGAAATGCTTGAAGAAAAGATGGAAAACTTGGAAATCCCTCCAAATTTTTCTTTATATCCATATGAAGCTAGTTCTGTTCAAATTCTGCATAATTCTGCAGAATTCTGCAAAGGATCACGGTCAGAGAAGGAGGATCCTTCTCATGACCGTCCGGTCGTATGTGTGACCCTCGGTCACAAGTGGTTGTCTCATTTAGGACTTGCCAGTAGGAACCGTTCGGTCCAGTACTCTCGGCCTGCATTGCTCTCGGACACGGGTAGTTCTTGGTCTATTGTCTTCACTCCTGTATTGTTCTCGGTCTTCACAGTCTTGGTCATTGAAGGATTGTTCCTTCTTATGACCGTTCGGTCTGGTACTGATGGTCAGAGGAGAAAAAGAGTTGATTCTCTTCCTGACCGTTCGGTTTGGTACTATTGGACAAAAAGATATAGGGTCCTTGGTCCCAAAAGTTCTCGGTCTCACATCACTCTCGGCCATATAAGGATTTTGGTCTTAGATGCTTTTGGTCATGTATTATTTCCGGTCAAGTATTGTTCTTGGTCCAGTACTGATCTTGGTCCTGTGAGTCTCGGTCAGAGAAGGTTGGCCCTTCTCATGACCGTTCGGTCTGATAAAGACTCTCGGTCATAG 1335 0.397 MVKAFKEKLGEGGYGSVFKGKLSSGTCVAIKMMDKSKGNGHDFISEVATIGRIHHQNVVQLIGFCVEGSRRALVYEFMSNGSLDRIIFSKDRSIDFDYNKIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDDNFIPKVSDFGLARLFPVDNSIDTMTAFWDAFDGNGKQKEKLKFPSEHSSQIFFPSWVYENIREEKDIEMEDITEEEKKIAKKMILLNPNDRPSMNKVVEMLEEKMENLEIPPNFSLYPYEASSVQILHNSAEFCKGSRSEKEDPSHDRPVVCVTLGHKWLSHLGLASRNRSVQYSRPALLSDTGSSWSIVFTPVLFSVFTVLVIEGLFLLMTVRSGTDGQRRKRVDSLPDRSVWYYWTKRYRVLGPKSSRSHITLGHIRILVLDAFGHVLFPVKYCSWSSTDLGPVSLGQRRLALLMTVRSDKDSRS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01888 444 Gene3D Transferase(Phosphotransferase) domain 1 79 165 - -
Vimu1g01888 444 FunFam Os07g0541700 protein 78 164 - -
Vimu1g01888 444 SUPERFAMILY Protein kinase-like (PK-like) 6 240 IPR011009 -
Vimu1g01888 444 Coils Coil 195 215 - -
Vimu1g01888 444 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu1g01888 444 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vimu1g01888 444 SMART serkin_6 3 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01888 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu1g01888 444 Pfam Protein kinase domain 6 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01888 444 PANTHER RUST RESISTANCE KINASE LR10-RELATED 182 256 IPR045874 GO:0004672
Vimu1g01888 444 ProSiteProfiles Protein kinase domain profile. 3 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01888 Vimu-Chr1 23568044 23573475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01888 1 249 Receptor kinase-like Gene Family AT1G66980 44.138 1.41e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01888 Pkinase 7.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01888 - - vun:114195039 412.535