Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01887 ATGGCAAAGTCCAGCACACTGTCTCTCCATGGTTATGTTATATTGATCACACTAATGCTATTCCATAAGCTCATTCCAATCAAAGGTAGCAGCTATCATGACGAGTGCGGGGAATTGTCTTGTGGGCCAAATCAACCACCTATTAGATTTCCCTTCCAACTTGTCAAGGGGATACATGAATGTGCTCATCGTGGGTATTGTCTGTATTGTACTCAAGAAAACAACACCATGCTTTTCCTCCCTACCATAAAACTCCAGGTCGAAGACATAGACTACGAAAATTTGCAAATTTACTTGAAGGACCCGAACAATTGCCTTCCAAAAACTCTTCTAAACCACTTCAATTCTTTTAATGATTATTACTTTACCGTCGTATCAAGCAACTTGAGCTTCTTTGACTGTTCTTCAGTTGGGTATGGACAACTCAGAAATACATATGCATACGGCCAAGATATGATCTCCTGTCCGATTTACGTCACTGATTCTCAGGCAAGTGTCTTGGAATGGGACCTGACTTTCTGTTCTAAGATGTTCGACGTCTCCGGACCTGTTTCGGCATTCGACATACTCCAGAATCAGTTAAAATTGACGTGGTCCAAACCAGCTTGTACTGCGTGCGAAGGGCAAGGCAAAAGATGTAAATGGAAGAACAACAGCACCGATGTTATCGAATGTTTGCATTGCTATGACCAAAGGGGCTTCCAGAAAAGAATCACGGATTTCAGATCTTTTATTGTTTCTACTACAGTTATCGTAGGTTCAATTCTTTTGGGTCTGCTGGTGATTGTGGTTTTTAAGATTTTCCGTTATTTTAGAAAGAAGGAAGAAGACCAAGCAAGAGTGGACAAGTTCTTAGAGGATTACAGAGCAGAAAAGCCTACAAGGTTTACCTACGCAGATGTCAAGAGAATAACCGGTGGTTTTAAAGAAAAACTAGGGGAAGGAGCTCACGGAGCTGTTTTCAGAGGAAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATCATCAATAATAGTGACGGAGATGGGAATGAGTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGATTCGTTTGTTAGGCTTTTGCGCCGAAGGAATCCATCGTGCTCTTGTCTACAATTTGTTTCCAAAGGGTTCGCTACAAAGCTTCATATTTCCACCCGATGACAAGGACCATTTCCTTGGCTGGGAGAAGATGCAACACATTGCTCTTGGTATAGCCAAAGGGATTGAGTATCTCCATCAAGGTTGTAATAGTCCCATTGTTCACTTTGACATAAATCCTCGCAATGTATTGCTTGATGACAACTTTACTCCAAAGATTTCTGATTTTGGATTAGCCAAATTGTGTTCCAAGAATCCAAGTTTGGTGTCCATGACAGCTGCTAGGGGGACCTTGGGATACATTGCACCGGAAGTTTTCTCCAGGAACTTCGGAAATGTTTCTTACAAGTCAGATATTTACAGTTATGGAATGTTGTTGCTGGAAATGGTTGGAGGAAGGAAGAATGTAGAAATGTCATCCCCGCAAAATATCCATGTTCTATATCCAGATTGGATCCATAATCTGGTTGATGGAGACATACATATCCAAGTTGAGGATGAAGACCATGTTAAAATTGCGAAGAAGTTAGCTATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGCCCATCCATGAAATCTGTCATACAAATGCTAGAAACTAAAGAGGTAATCCAGTTAACTGTGCCTCCTAATCCATTTCACTCAACCACTGCTAGTCTCACTTCAGCAAGAAGACCTTTGGAGTTGGAAGCAATTCAAGAGTAA 1836 0.4139 MAKSSTLSLHGYVILITLMLFHKLIPIKGSSYHDECGELSCGPNQPPIRFPFQLVKGIHECAHRGYCLYCTQENNTMLFLPTIKLQVEDIDYENLQIYLKDPNNCLPKTLLNHFNSFNDYYFTVVSSNLSFFDCSSVGYGQLRNTYAYGQDMISCPIYVTDSQASVLEWDLTFCSKMFDVSGPVSAFDILQNQLKLTWSKPACTACEGQGKRCKWKNNSTDVIECLHCYDQRGFQKRITDFRSFIVSTTVIVGSILLGLLVIVVFKIFRYFRKKEEDQARVDKFLEDYRAEKPTRFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKIINNSDGDGNEFINEVGIMGKIHHINVIRLLGFCAEGIHRALVYNLFPKGSLQSFIFPPDDKDHFLGWEKMQHIALGIAKGIEYLHQGCNSPIVHFDINPRNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVEMSSPQNIHVLYPDWIHNLVDGDIHIQVEDEDHVKIAKKLAIVGLWCIQWQPVNRPSMKSVIQMLETKEVIQLTVPPNPFHSTTASLTSARRPLELEAIQE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01887 611 Gene3D Transferase(Phosphotransferase) domain 1 381 584 - -
Vimu1g01887 611 Gene3D Phosphorylase Kinase; domain 1 279 380 - -
Vimu1g01887 611 Pfam Protein kinase domain 309 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01887 611 FunFam PR5-like receptor kinase 381 586 - -
Vimu1g01887 611 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Vimu1g01887 611 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 592 IPR045874 GO:0004672
Vimu1g01887 611 FunFam serine/threonine-protein kinase PBS1-like 273 380 - -
Vimu1g01887 611 ProSiteProfiles Protein kinase domain profile. 306 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01887 611 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vimu1g01887 611 SUPERFAMILY Protein kinase-like (PK-like) 290 578 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01887 Vimu-Chr1 23564675 23566586 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01887 12 589 Receptor kinase-like Gene Family AT1G66910 33.493 8.48e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01887 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01887 - - gmx:102662104 842.802