Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01885 ATGCTCAATTTTCAAAAGCTGTCTCTTCTATGGACGCTGTTGTTTCTAGTAGGGAATCCTGCGACCGGCAAGAACCACTGCGCCGATAAATGTGGCAACGTTCGCATTCAGTTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACCGACTATCCGCCTGAGTTCGGTCTGTTATGCACCCAACAAAATGAGCCCATTCTGGAGCTGCCTGCCCTTCGAATACAATTGTTTGTCAGAGAAATTGATTACGAATCCACACTAATTGAAATATATGACCCCCAAAATTGCCTTCCCGATCAACTCTTGAAACTCGGTAATGCATCCATCTCTCCATTCCGATTCCCCAAATGTCTTGGTCCTCCTCCTCCTAAGTTTGACATTTCCTTCTTCTGTTGCGACTCATTGTCGTACCCTATTTCGCTACTAGAATCCCACAACGACGTCGTTGATCCTCGATTAGTATCCTGCACGAAGCTGAAAGATGTTTCCGTCGAATGGTGGTATTGGTTTAATGGGGTGAAGTTAGTTATGGAATGGTCAAAACCTGACTGTGGATACTGTGAAGCACAGGGCCAAAAATGTAAATGGAGGAATGGTACTAACGGTGGAACTGAATGTTATGCTTGCCGAACAAAAAGGAGTCCCACGTCAGCTTTCATCCACATTGCTGCAGGAGGAGTAGCTAGTTTGATACTTTTGCTGCTACTTGTCAAGGCATTGTTTTTTGCGTACGACTATTATGAAAAGAGAGAAGACCAAGCTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAATGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGTTGTGAAAATACTCAAAGACACAGTGGGAGATGGAAAGGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCACATTAACATTGTTCGCCTGCTTGGTTTCTGCGCAGATGAGTTCCACCGTGCTCTCAGATTCTTGGCACCGGACAACAAGGATGTTTTCCTTGATTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGGGAGAGGGATTGAGTATCTCCACGTTGGTTGTGATCATAGAATTCTTCATTTTGACATCAATCCTCACAATGTTTTACTAAATGATCTTTTTGTCCCAAAAATCACTGATTTTGGACTAGCCAAGTTGTGTCCCAAAAATCAGAGCACGGTGTCGATGACTGCAACCAGGGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCTCGGAATTTTGGTAATGTGTCTTACAAGTCCGACATTTACAGCTATGGGATGTTGTTTTTAGAAATGGTTGGAAGAAGAAAGAATACAAATGTGTCAGTTGAGGACAGTTTCCAAGTGCTGTATCCAGAGTGGATCCATAACTTGGTGGAAGGAAAAGATGTACAAATTAGCGTTGAGGATGATGCAGATGCTAAAATTGTGAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGCGGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGGATGTGAGTTAGTAGCACCCCGTTGTCCTTTTCATATTTCTGGTTCTTCAACAATAAATACCGTTGTTCCTGCAAGACGTCAAAATTTTGATAACAAGCAAGGCGATCAAGTTTCATATGTTGTCTGGGGTAACAGATATACTTCAGGCGCGATAGAACTTACATTCAACATGGCTCACAATGCAAATTTATATGTAGTGAACTATTTCATGTTGGTGAAGCTTGCTTGGAGTAATGCCTATGATTGTTGGGGTTGTTCATCATTGTGCTAA 1905 0.4215 MLNFQKLSLLWTLLFLVGNPATGKNHCADKCGNVRIQFPFYLRNKNLNHTTDYPPEFGLLCTQQNEPILELPALRIQLFVREIDYESTLIEIYDPQNCLPDQLLKLGNASISPFRFPKCLGPPPPKFDISFFCCDSLSYPISLLESHNDVVDPRLVSCTKLKDVSVEWWYWFNGVKLVMEWSKPDCGYCEAQGQKCKWRNGTNGGTECYACRTKRSPTSAFIHIAAGGVASLILLLLLVKALFFAYDYYEKREDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAMFKGMLSREILVVVKILKDTVGDGKDFINEVRAIGKIHHINIVRLLGFCADEFHRALRFLAPDNKDVFLDWEKLQQIALGVGRGIEYLHVGCDHRILHFDINPHNVLLNDLFVPKITDFGLAKLCPKNQSTVSMTATRGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLFLEMVGRRKNTNVSVEDSFQVLYPEWIHNLVEGKDVQISVEDDADAKIVKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDGCELVAPRCPFHISGSSTINTVVPARRQNFDNKQGDQVSYVVWGNRYTSGAIELTFNMAHNANLYVVNYFMLVKLAWSNAYDCWGCSSLC 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01885 634 ProSiteProfiles Protein kinase domain profile. 283 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01885 634 Gene3D Transferase(Phosphotransferase) domain 1 354 547 - -
Vimu1g01885 634 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vimu1g01885 634 Pfam Protein kinase domain 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01885 634 FunFam PR5-like receptor kinase 354 551 - -
Vimu1g01885 634 Gene3D Phosphorylase Kinase; domain 1 257 353 - -
Vimu1g01885 634 SUPERFAMILY Protein kinase-like (PK-like) 265 542 IPR011009 -
Vimu1g01885 634 PANTHER RUST RESISTANCE KINASE LR10-RELATED 254 553 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01885 Vimu-Chr1 23547417 23550017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01885 248 554 Receptor kinase-like Gene Family AT1G66980 46.769 2.59e-88 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01885 Pkinase 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01885 - - var:108338466 956.436