Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01880 ATGGCAAATGGGAAACAGAGGCATATCCCTTATAGAGACTCCGGACTAACGTTTCTTCTTCAGGACTCTCTTGGCGGAAACTCGAAAACAATGACCATTGCCAATGTCAGCCCTTCTATCTGGTCTATTGTTTCTCTGAGAATTACAGCTCCAAGAACTCATCAAGAAGATGGTTGTGATCTTTCTTTGAAGAGCTTCCGAAGGAGATTGATATTGCGCTTACTGCTTGGGCTGGACTTGTGGAGTTTGGTACACTTTGAGGATTGTTCAAAGTGGGTTGCAGATTGCAGGAGAGGGGATATCTTGCTACAAGTCTTGTTGTGTGGTTTGCCTATATTTTGGCTAGGGGTTAGAGATGTGTTTTATATTTTTGACGTGGAGGTCTCTATAAAAGCCTTGTTATTCAATGGTGAAGATTTGTTGAGAAGGCTTAGAGGGAAGAGTATTTTGTTTGTGGGGGACTCCTTGAGTTTGAATCAATGGCAATCACTCACTTGCATGCTTCACACGGCTGTGCCACATGCCAAGTTTCAATCAGAATTAGGGTCTATCCACCTTCACTTTCCTGTGGGTGATAAGAGCCTGGTTCGAGCTATTGACATGAATGCATTTGAGCTTGATCTACTAGAAGAATATGGGTCACACTTTAAGAAGCTGAGTCTAGGTGATGAATTGCCCATCAAATTCTCCAAAAAGTCCGCTGGTCTTGGCGAATTGAAGTATCCTTTGATTTTAGATATCACCAAATCCATCTCGAAATTTTTTGGTGTTCTCATTCCTGATCAGCATTCTACAATTCACAACCTGGCCAATGGTAGAAGTGTTGATGAGACAAAGAGAACTCTCCAGTATGTGCAGAAGAACCCAGATGAAGTTTGCCCAGTTTGGTGGAAGCCTGGTGAGAAGTCCATGAAACCATACCCTAAACTTAGCAAATAG 939 0.4249 MANGKQRHIPYRDSGLTFLLQDSLGGNSKTMTIANVSPSIWSIVSLRITAPRTHQEDGCDLSLKSFRRRLILRLLLGLDLWSLVHFEDCSKWVADCRRGDILLQVLLCGLPIFWLGVRDVFYIFDVEVSIKALLFNGEDLLRRLRGKSILFVGDSLSLNQWQSLTCMLHTAVPHAKFQSELGSIHLHFPVGDKSLVRAIDMNAFELDLLEEYGSHFKKLSLGDELPIKFSKKSAGLGELKYPLILDITKSISKFFGVLIPDQHSTIHNLANGRSVDETKRTLQYVQKNPDEVCPVWWKPGEKSMKPYPKLSK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01880 312 Pfam C-terminal domain of 1-Cys peroxiredoxin 282 306 IPR019479 GO:0051920
Vimu1g01880 312 Gene3D - 1 47 - -
Vimu1g01880 312 Pfam Kinesin motor domain 4 39 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu1g01880 312 Gene3D Glutaredoxin 224 312 - -
Vimu1g01880 312 ProSiteProfiles Kinesin motor domain profile. 1 71 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu1g01880 312 PANTHER KINESIN-LIKE PROTEIN KIN-12D 1 41 IPR044986 -
Vimu1g01880 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 42 IPR027417 -
Vimu1g01880 312 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 135 176 IPR026057 GO:0016740
Vimu1g01880 312 SUPERFAMILY Thioredoxin-like 231 308 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01880 Vimu-Chr1 23371695 23378306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01880 1 39 Calmodulin-binding Proteins AT5G65930 56.410 2.51e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01880 K03386 - jre:108985296 130.568