Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01875 ATGCTTTTGCTGCTACTGGTCAAGGCAGTGTTTTATGCGTATGACTATTATGTGAAGAGAGGAGAAGACCAGACTCGAATAAAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCTACCAGGTTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGATGTGAAGATACTCAAAGATACAGTGGGAGATGGAAAGGATTTCATAAATGAAGTGAGGGCCATAGGGAAAATTCATCACGTTCACATTGTTCGCCTGCTTGGTTTCTGCGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGCTCTAGCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGGCAGAAGAATTGAGTATCTCCACCTCGGCTGTGATCATAGAATTCTTCATTTTGACATCAATCCTCACAATGTTTTGCTAGATAACCTTTTTGTCCCAAAAATCACTGATTTTGGACTAGCCAAATTGGGAACTTTGGGCTACATTGCCCCTGAAGTTTTCTCTCGGAATTTTGGTAATGTGTCTTACAAGTCTGACATTTACAACTATGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACCTATGTCTCAATTGAGGACAGTTTCCAAGTTCTGTACCCAGAGTGGATCCACAACTTGTTGGAAGGAAGAGACGTTCAAATTAGTCTTGAGAAGGAGGGAGATGCTAAAATTGCCAAGAAACTTTCCATTTTAGGACTTTGGTGCATTCAATGGAACCCAGCAGATTGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGATGTGAATTAGTAGCACCCGCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACAATTCTTCCAGCAAGACCTCAAAATTTAGAGTTGGAAGTTATTCATGAAATAGAAGAAAATGATATCGATCAATTTTAG 1074 0.4069 MLLLLLVKAVFYAYDYYVKRGEDQTRIKKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSREILVDVKILKDTVGDGKDFINEVRAIGKIHHVHIVRLLGFCADEFHRALVYDFFPNGSLQRFLALADNKDVFLGWEKLQQIALGVGRRIEYLHLGCDHRILHFDINPHNVLLDNLFVPKITDFGLAKLGTLGYIAPEVFSRNFGNVSYKSDIYNYGMLLLEMVGGRKNTYVSIEDSFQVLYPEWIHNLLEGRDVQISLEKEGDAKIAKKLSILGLWCIQWNPADCPSMKTVVQMLEGDGCELVAPASPFHISGSSTTNTILPARPQNLELEVIHEIEENDIDQF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01875 357 Pfam Protein kinase domain 56 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01875 357 SUPERFAMILY Protein kinase-like (PK-like) 32 309 IPR011009 -
Vimu1g01875 357 FunFam serine/threonine-protein kinase PBS1-like 20 126 - -
Vimu1g01875 357 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 325 IPR045874 GO:0004672
Vimu1g01875 357 Gene3D Phosphorylase Kinase; domain 1 25 126 - -
Vimu1g01875 357 Gene3D Transferase(Phosphotransferase) domain 1 127 314 - -
Vimu1g01875 357 ProSiteProfiles Protein kinase domain profile. 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01875 Vimu-Chr1 23327978 23329093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01875 24 321 Receptor kinase-like Gene Family AT1G66980 45.312 1.30e-86 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01875 Pkinase 2.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01875 - - var:108338466 647.121