Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01873 ATGACTAAAGGTTTCAAAGTGAAATTAGGGAAAGGAGGTTTTGGTTCTGTGTACAAAGGAAAGCTTCAAAGTGGGATAGATGTAGCAGTAAAGATGTTGAGCAAATCCAAAGACAATGGACAAGACTTTGTTAATGAAGTAGCTACCATTGGAAGAATACATCATGTGAATGTAGTAGGTCTTATTGGATATTGTGTTGAAGGGGAAAAGCGTGGTCTAATTTATGAATACATGGCTAATGGGTCATTGGATAAATTTATTTTCTCTAAAGAAGGAAGTGTTCTTTTGAGTTATGAGAAGATATATGAAATATCTCTTGGAATTTCTCATGGGATAGCATATCTACATCGAGGTTGTGATGTGCAGATTTTACATTTTGATATCAAGCCTCATAATATTCTTTTAGATGATAACTTTACTCCAAAGGTTTCAGATTTTGGACTCGCAAAATTGTATTCTACAAAAGACAAATCCATTATTTTGACTGCAATAAGGGGAACACTGGGTTACATGGCTCCAGAATTATTCTACAAAAATGTAGGTGGAGTTTCACATAAAGCAGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTGGGAGGAGAAATTCAGATCCACATGCAGAACATTCAAGTCAAAATTATTTTCCCTTTTGGATTCATGATCAATTTAAAGAAGAGAAAGATGTTGACATGGAAGGTGCTTCAGATATGGATAAAATTCTCATAAGAAAAATGTTCATAGTTGCACTTTGGTGTATACAATTGAAACCATGTGATCGTCCAACAATGAGCAAAGTTGTAGAGATGCTTGAAGGAAAAGTTGAAAGTCTTGAAATTCCTCCAAAACCTTCCTTTTATCCTCATGAAATGTTAGAACATGATGGTAGATTCAACTCTGACGAAATATCATGGAGTGATTCAACTAGTTATAATGTGAGTGTTGACAAAATTACGCCTAATCAATCATATTTGGAATAA 987 0.3425 MTKGFKVKLGKGGFGSVYKGKLQSGIDVAVKMLSKSKDNGQDFVNEVATIGRIHHVNVVGLIGYCVEGEKRGLIYEYMANGSLDKFIFSKEGSVLLSYEKIYEISLGISHGIAYLHRGCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYSTKDKSIILTAIRGTLGYMAPELFYKNVGGVSHKADVYSFGMLLMEMASGRRNSDPHAEHSSQNYFPFWIHDQFKEEKDVDMEGASDMDKILIRKMFIVALWCIQLKPCDRPTMSKVVEMLEGKVESLEIPPKPSFYPHEMLEHDGRFNSDEISWSDSTSYNVSVDKITPNQSYLE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01873 328 Pfam Protein kinase domain 7 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01873 328 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 292 IPR045874 GO:0004672
Vimu1g01873 328 Gene3D Transferase(Phosphotransferase) domain 1 79 282 - -
Vimu1g01873 328 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu1g01873 328 FunFam PR5-like receptor kinase 78 285 - -
Vimu1g01873 328 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Vimu1g01873 328 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vimu1g01873 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu1g01873 328 ProSiteProfiles Protein kinase domain profile. 3 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01873 328 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01873 328 PIRSF ILK 4 282 - -
Vimu1g01873 328 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01873 Vimu-Chr1 23293885 23294871 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01873 1 306 Receptor kinase-like Gene Family AT5G38280 50.160 5.94e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01873 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01873 - - var:108336466 532.332