Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01871 ATGCTTAGTTTTCAGAAGCTATCTCATCTGTTGACGCTGCTGTTTCTGATATGGAAACCTGCGACGGGCAAGAACCACTGCGCCGATAAATGTGGCCAAGTTCACATTGAATTTCCATTTTATCTCAGAAACAAAAACTTGAATTACTCCACCGACTACCCCCCTGAGTTCGGTCTGTTATGCACCCAACAAAATGAGCCCATTCTGGAGCTGCCGGCTGTTCCAGTACAATTGTTTGTCAGAAAAATTCATTACAAATCTACTCTAATTGAAACATATGACCCCCAAAATTGCCTTCCCGATCAACTCTTGAAACTCGGCAACGCATCCATCTTTCCATTGCGATTTCAGAAATATTATCCTGACAAGTTTAACTTTTCCTTCTTCCGTTGCGATTCACTGCCGTGCCCAATTTTTCTACTACAATCCGATAACGGCGTCGATGACCCCCAATTGGTATCCTGCACGAAGCTGAAAGATGTTTCTACCGAATGGTTGTATCTTTATGATGAGGATACGTTGTTTATGGAATGGCCCAAACCTGACTGTGGATACTGTGAAGCACAAGGCCAAAAATGTAAATGGAAGAATGGTACTAACGGTGCAACTGAATGTCATGCTTGCCGAACAAAAAGGATTCCAACGTCAACTGTCATCTACATTGCTGTAGGGGGAGTAGTTGGTTTGATGCTTTTGCTGCTACTTGTCAAGGCATTGTTTTATGCGTATGACTATTATGTGAAGAGAGGAGAAGACCAGACTCGAATAGAGAAATTCTTGGAAGATTACAGGGCAATGAAGCCTACCAGGTTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTCGTGAAATTCTTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAGATGGGAAGGATTTCATAAATGAAGTGAGGGCCATTGGGAAAATTCATCACGTTCACATTGTTCGTCTCCTTGGTTTCTGCGCAGATGAGTTTCACCGTGCTCTCGTCTACGATTTGTTTCCAAATGGGTCGTTGCAGAGATTCTTGGCTCCAGCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGGCAGAGGAATTGAGTATCTCCACCTCGGCTGTGATCATAGAATTCTTCATTTTGACATCAATCCTCACAATGTTTTGCTAGATAACCTTTTTGTCCCAAAAATCACTGATTTTGCACTAGCCAAATTGTGTCCAAAAAATCAGAGCACGGTGTCGATGACTGCAGCCAGGGGAACTTTGGGCTACATTGCACCTGAGGTTTTCTCTCGGAACTTTGGTAACGTGTCTTACAAGTCTGACATTTACAGCTATGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACCAATGTCTCAGTTGAGGACAGTTTCCAAGTTCTGTACCCGGAGTGGATCCACAACTTGTTGGAAGGAACAGATGTGCAAATTAGTCTTGAGGACGAGGGAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAATGGAACCCAGCAGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGATGGATGTGAATTAGTAGCACCCGCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACCGTTCTTCCAGCAAGACCTCAAAATTTAGAGTTGGAAGTTATTCATGAAATAGAAGAAAACAATATCGATCAATTTTAG 1806 0.4258 MLSFQKLSHLLTLLFLIWKPATGKNHCADKCGQVHIEFPFYLRNKNLNYSTDYPPEFGLLCTQQNEPILELPAVPVQLFVRKIHYKSTLIETYDPQNCLPDQLLKLGNASIFPLRFQKYYPDKFNFSFFRCDSLPCPIFLLQSDNGVDDPQLVSCTKLKDVSTEWLYLYDEDTLFMEWPKPDCGYCEAQGQKCKWKNGTNGATECHACRTKRIPTSTVIYIAVGGVVGLMLLLLLVKALFYAYDYYVKRGEDQTRIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSREILVAVKILKDTVGDGKDFINEVRAIGKIHHVHIVRLLGFCADEFHRALVYDLFPNGSLQRFLAPADNKDVFLGWEKLQQIALGVGRGIEYLHLGCDHRILHFDINPHNVLLDNLFVPKITDFALAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQVLYPEWIHNLLEGTDVQISLEDEGDAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDDGCELVAPASPFHISGSSTTNTVLPARPQNLELEVIHEIEENNIDQF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01871 601 FunFam PR5-like receptor kinase 356 562 - -
Vimu1g01871 601 Gene3D Transferase(Phosphotransferase) domain 1 356 558 - -
Vimu1g01871 601 SUPERFAMILY Protein kinase-like (PK-like) 261 552 IPR011009 -
Vimu1g01871 601 FunFam serine/threonine-protein kinase PBS1-like 249 355 - -
Vimu1g01871 601 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Vimu1g01871 601 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Vimu1g01871 601 ProSiteProfiles Protein kinase domain profile. 281 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01871 601 Pfam Protein kinase domain 285 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01871 601 Gene3D Phosphorylase Kinase; domain 1 255 355 - -
Vimu1g01871 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 253 569 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01871 Vimu-Chr1 23105766 23107702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01871 55 554 Receptor kinase-like Gene Family AT1G66910 34.851 1.20e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01871 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01871 - - var:108338466 989.949