Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01868 ATGACTAAAGGTTTCAAAGTGAAATTAGGTGAAGGAGGTTTTGGTTCTGTGTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGGAGTAAAGATGTTGAGCAAATCCAAAGATAATGGACAAGACTTTGTTAATGAAGTATCTACCATTGGAAGAATACATCATGTGAATGTAGTTCGACTTATTGGATATTGTGTTGAAGGAAAAAAACGTGGTCTAATTTATGAATACATGCCTAATGGATCATTGGATAAATACATTTACTCTAAAGAAGGAAGTGTTCCTTTGAGATATGAGAAGATATATGAAATATCCATTGGAATTGCTCATGGGATAGCATATCTTCATCGAGATTGTGATATGCAGATTTTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGATAATTTTATTCCAAAGGTTTCAGATTTTGGACTTGCAAGGTTGTATCCTACAAAAGATGGATCCATTATTTTAACTGAAATAAGAGGAACATTGGGTTACATGGCTCCAGAGTTATTTTACAAAAATATAGGTGGAGTTTCTCATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGACGAGTAGGAGAAAAAACTCAAATCCTCGTACAGAACATTCAAGTCAACATTATTTTCCCTTTTGGATCCATGATCAACTTAAAGAAGACAAAGATATTGACATGAAAGATGCTTCAGAAATGGATAAGATTTTGATGAAAAAAATGTTTATAATTGCACTTTGGTGTATACAATTCAAACCAAGTGATCGTCCATCAATGAAGAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAAGTCTTAATATTCCTCCAAAACCTTCTTTTTATCCTCATGAAATGTTAGAAAATGATGGTACAATCAACTCTCCAAGAACATCATGGATTGATTCAAATAGTTCGAGTGTGACTGGTAACCAAAATCAAAATATATTGGGTTCTGGTATCGCGTTGGGCGACCTTGGAACGCCCCCTCAACGCTTTGTTTACGCGAGCTTTGCCATTGACCGCCCCGAGCGCCCTTCTAAGCACCTTTTTTGCGCAAGGTTTAATGTTGAGTGCCTTCTAGGCGCCCCTTTCCAATGGCATCTTATGCCTAGGCACCCCTTTTCAGGCATTGATTCTATTGTGATACATGAAGTGGTATGTGTTGAGAATGTTGATAAGGGAAGCACTCGTTTAGCTAAACCTTAA 1230 0.3634 MTKGFKVKLGEGGFGSVYKGKLRSGLDVGVKMLSKSKDNGQDFVNEVSTIGRIHHVNVVRLIGYCVEGKKRGLIYEYMPNGSLDKYIYSKEGSVPLRYEKIYEISIGIAHGIAYLHRDCDMQILHFDIKPHNILLDDNFIPKVSDFGLARLYPTKDGSIILTEIRGTLGYMAPELFYKNIGGVSHKADVYSFGMLLMEMTSRRKNSNPRTEHSSQHYFPFWIHDQLKEDKDIDMKDASEMDKILMKKMFIIALWCIQFKPSDRPSMKKVVEMLEGKVESLNIPPKPSFYPHEMLENDGTINSPRTSWIDSNSSSVTGNQNQNILGSGIALGDLGTPPQRFVYASFAIDRPERPSKHLFCARFNVECLLGAPFQWHLMPRHPFSGIDSIVIHEVVCVENVDKGSTRLAKP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01868 409 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Vimu1g01868 409 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01868 409 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vimu1g01868 409 ProSiteProfiles Protein kinase domain profile. 3 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01868 409 Pfam Protein tyrosine and serine/threonine kinase 6 273 IPR001245 GO:0004672|GO:0006468
Vimu1g01868 409 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Vimu1g01868 409 FunFam PR5-like receptor kinase 78 285 - -
Vimu1g01868 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu1g01868 409 Gene3D Transferase(Phosphotransferase) domain 1 79 282 - -
Vimu1g01868 409 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 293 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01868 Vimu-Chr1 23084584 23087967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01868 1 312 Receptor kinase-like Gene Family AT4G18250 45.794 1.39e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g01868 PK_Tyr_Ser-Thr 9.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01868 - - var:108336466 601.668