Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01864 ATGGAGCAAGAGACGCAAGTTTTAGACAGAGGGAATACTGTCCCCACAAATTTTGAAGATTATAGACTATTATACCCTGCCTCATTCACTTGTAAATCATATCAGTATAGTTTCCTTCTTTACCTTAACATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTTAGTAGCTTCCTAGGTTCATCTCCCGAAGAAGCTTTGCTACAAAACCAAAATCCTAAACCACATCATGGACATGTTGAGGATGTCACTGTAGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGTGGTTCCACCAATGACCATGGATTTGTGAATGCCACAACTCATGCTCCTAGCAACTACTGGATACCAACTCAAGAACAAATCCTCATTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCTGCAAAACCTTCAATCGCCACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGGAGAGGACCAGACTCGCTGAAACGAACCCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCTCGAGAGGGTGCAAGAACAACATCGATCACCCACGTGCGAAGCCTCTGAAGGACTTTCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCTCCAAACCCTTCACGTGCCGCAAGTGCGCGAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATGAAGGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 831 0.4801 MEQETQVLDRGNTVPTNFEDYRLLYPASFTCKSYQYSFLLYLNMNQNQLQPLPLLSSFLGSSPEEALLQNQNPKPHHGHVEDVTVALHIGLPNNSSGGSTNDHGFVNATTHAPSNYWIPTQEQILIGFSHFSCPVCCKTFNRHNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIDHPRAKPLKDFRTLQTHFKRKHGSKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHMKAFGFGHTPFTSSSDAM 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01864 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Vimu1g01864 276 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Vimu1g01864 276 Gene3D Classic Zinc Finger 130 153 - -
Vimu1g01864 276 SUPERFAMILY beta-beta-alpha zinc fingers 126 153 IPR036236 -
Vimu1g01864 276 FunFam Zinc finger protein WIP2 184 266 - -
Vimu1g01864 276 PANTHER ZINC FINGER PROTEIN WIP2 43 270 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01864 Vimu-Chr1 23062884 23064938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01864 37 272 C2H2 Transcription Factor Family AT1G34790 57.034 5.29e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g01864 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01864 - - var:108336851 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01864 1 23062884 23064938 Vimu1g01864 1 23062884 23064938 ECH