Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01863 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAGGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGGGGCAGGAGCACCGGCACTAGCACCGCCGCCGCCGCCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAAGTACCTTTTCCACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAACCCTCATTTTCTGCATATCGTCCACCACCTCAGTTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCACGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 828 0.4964 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPGAGAPALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRSTFSTPQPHRIPAGPSYLYYPTPMEPSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTTSEAAGGVVITSESSNTQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01863 275 Gene3D - 3 111 IPR012677 -
Vimu1g01863 275 PANTHER BOULE-RELATED 6 252 - -
Vimu1g01863 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vimu1g01863 275 MobiDBLite consensus disorder prediction 221 275 - -
Vimu1g01863 275 MobiDBLite consensus disorder prediction 91 136 - -
Vimu1g01863 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Vimu1g01863 275 MobiDBLite consensus disorder prediction 245 275 - -
Vimu1g01863 275 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Vimu1g01863 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vimu1g01863 275 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vimu1g01863 275 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01863 Vimu-Chr1 23041906 23046350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01863 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.42e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01863 K25006 - gmx:100788516 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01863 1 23041906 23046350 Vimu1g01863 1 23041906 23046350 ECH
Vimu1g01863 1 23041906 23046350 Vimu10g02504 10 36249354 36253271 PCT