Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01828 ATGGATTCTGATAGAAAAACTGAACAAGTGAAGGACATGTATCCTATAAAATACTTTCGAAGAAGGAGAAAACAAATAATAGAGGCAAAAGATAGTAAGGAAATGAAGCAAAAAGCAAAAACCAAAGAAGATGAGCATGTTGAATTCTCTGTGTATTTGCTGCAAACACTTCTTCTACATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAATGAAACAGAAGCTAAGATACATGGTATCTCAATCTCTGATCTTAGAGTAAAAGAGGCAGTATATTCTAAGGACGAGCGAGTATATTGTGATAATTGTAAAACGTCAATATTTGATTACCACAGAAGCTGTACATTATGCACATTCGATCTTTGTCTCATCTGTTGTCGTGAGCTTCGTAATGGGCAGCTTTTAGGTGAAGAAGTAATAAATGAAAGGGTAAACCAAACTGAATCAAACATTGTTGCTAAACCAGTAGTTCGTGAATGGTCAAGATTTGGATGGCATGCCGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTTAGTGATGAATATAACCATGGTTTTCTAGAACTGAGAAGCGTGTTAGGTCAAAATTTTATTACTGATTTATTGTGTAAAGCAAATGAACTAGCACAAAGACACGAACTTGGGACACTTGACAACTGCTGTACGTGTTCAAGGCTTGACAAGAAAACAGATGTTAGATATCATGAGCCTGTTATTGTTAGCCATGCGATTGATAGTGCTTCTGGTTTAAGCTGGGAACCATCTGTCATGTCTCGTGCATTGTGTCAGATAGCTGAGAGCAGGCATCCACAACATTTGGATATGAAGGCAATCGATTGCTTAGATTTGTGCGAGGTAAATGTGTTGACGCATATAGCTGAAGTTAAATTGGAAGTTACTGGCATTGAGAATTTGAAAGAAAAGCAGTTGGAGCAAGACCAAGGGGATGGTTCAGATGGTGCAGTGTGGGATATTTTTCAGAGGCAGGACGTACCTAAATTGCAGGAGTATCTGAGGAAGCATTTTAGAGAGTTTAGGCACATCCATTGTCGTCCTTTAAAGCAGGTAAGACAATACTTGTTGTATATGGATAATGCATCTGCTGAGGTTAAGTATTTTCTTGTAGGAATTGAGCCCTGGACATTTATTCAGAAGCTAGGAGAAGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTTAGAAATCTCAAGTTGTGTAATAAGGTTGCAATGGATTTTGTTTCTCCTGAAAGTGTTGGGGTGTGTTTTGGTTTAACCGAGGAATTTCGTACACTTCCAATAAATCATGGGTGTGCTGAGGACAAATTGGAGGTGAAAATGATGACAATATATGCTATGCAAGATGTGATAAGAAAATTGGAAAGGACAAGGTTAGCAGACAAGGGATCGGTGAAAGTGTAA 1425 0.3811 MDSDRKTEQVKDMYPIKYFRRRRKQIIEAKDSKEMKQKAKTKEDEHVEFSVYLLQTLLLHLRLLDEEQMIENETEAKIHGISISDLRVKEAVYSKDERVYCDNCKTSIFDYHRSCTLCTFDLCLICCRELRNGQLLGEEVINERVNQTESNIVAKPVVREWSRFGWHAESNGRIPCPKVSDEYNHGFLELRSVLGQNFITDLLCKANELAQRHELGTLDNCCTCSRLDKKTDVRYHEPVIVSHAIDSASGLSWEPSVMSRALCQIAESRHPQHLDMKAIDCLDLCEVNVLTHIAEVKLEVTGIENLKEKQLEQDQGDGSDGAVWDIFQRQDVPKLQEYLRKHFREFRHIHCRPLKQVRQYLLYMDNASAEVKYFLVGIEPWTFIQKLGEAVFIPAGCPHQVRNLKLCNKVAMDFVSPESVGVCFGLTEEFRTLPINHGCAEDKLEVKMMTIYAMQDVIRKLERTRLADKGSVKV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01828 474 SMART cupin_9 226 431 IPR003347 -
Vimu1g01828 474 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 237 289 IPR045109 GO:0032454|GO:0033169
Vimu1g01828 474 Pfam JmjC domain, hydroxylase 322 414 IPR003347 -
Vimu1g01828 474 Gene3D Cupin 230 289 - -
Vimu1g01828 474 Gene3D Cupin 290 440 - -
Vimu1g01828 474 ProSiteProfiles JmjC domain profile. 226 431 IPR003347 -
Vimu1g01828 474 SUPERFAMILY Clavaminate synthase-like 323 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01828 Vimu-Chr1 21906271 21911844 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu1g01828 JmjC 6.4e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01828 K15601 - gmx:112997634 323.553