Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01827 ATGACAAACCGTAATGTGAATAAGACGATTCTGGAGTTGGCAATGTCGATTTCAAACTCAGGTGCTCTACCTAGAGCTGCAGTGCCTGGAATAATGGCTTTGCTTTGTGGGGTTTTAGGCCTACCCCAGAAAAAGCTGTTTTTGAAAACTTTGGAGGATGGAAGTGGAAAAGGAGGAACCAAAGTTAACACATGGATTGATTCAATGAGAGCTTCTTCTCCCACTCGAGTCAAATCCACACAGAACCAAGACCCCAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAACCTGTTTGATCAGATTGTATGTGAGTCCAAAGGGAAGCAGATTGTCACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATACATGAGTCAAAAGATGAGGGCCACACTGAAGGACATAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCATAGACAAGGTGTATAGCTTTGTGAGATTGGCTGAACTGTACTATGCTGGGAGCCATGGGATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAACGAAGCAGTACTTTTCCAACCCGCTAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGATAAAACAAAGTCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGTTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTTAGCTTGGTCCTCGATCACTACCCCAAACTAAAGCTAACTCAAGGCAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAATCACTTGGATATGCTAACTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGGAAGAGGGGTCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACCGATGCTTCCTACACTCTGCAAGATCCAACTGAGGTATGA 1050 0.44 MTNRNVNKTILELAMSISNSGALPRAAVPGIMALLCGVLGLPQKKLFLKTLEDGSGKGGTKVNTWIDSMRASSPTRVKSTQNQDPSPWTLYHPSALNLFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSQKMRATLKDIARHFPTAIVSGRCIDKVYSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNEAVLFQPASEFLPMINEVYNILVDKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEQVSLVLDHYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRKRGQGIGILVSKIPKETDASYTLQDPTEV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01827 349 NCBIfam HAD-IIB family hydrolase 114 321 IPR006379 -
Vimu1g01827 349 Gene3D - 114 343 IPR023214 -
Vimu1g01827 349 FunFam Trehalose 6-phosphate phosphatase 201 277 - -
Vimu1g01827 349 NCBIfam trehalose-phosphatase 109 349 IPR003337 GO:0003824|GO:0005992
Vimu1g01827 349 Gene3D - 193 277 - -
Vimu1g01827 349 FunFam Trehalose 6-phosphate phosphatase 207 349 - -
Vimu1g01827 349 CDD HAD_TPP 114 349 - -
Vimu1g01827 349 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 55 349 IPR044651 GO:0004805|GO:0005992
Vimu1g01827 349 SUPERFAMILY HAD-like 114 349 IPR036412 -
Vimu1g01827 349 Pfam Trehalose-phosphatase 114 346 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01827 Vimu-Chr1 21782590 21784600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01827 K01087 - gmx:100792915 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01827 1 21782590 21784600 Vimu10g02539 10 36660176 36661934 PCT