Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01823 ATGGCAGCTACGATGGATTTGTACAACGGACAACCACAAGTTCAATCGGATCCATTCAGAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCCTTATCTTCAGATTCAGCTTTACCTTCAACATCGACTTCTACTTCATATTCCTACTCTCCTTCCCCTCTCTCACTCCCTCCACACCCTAGTTTCTACTCAGACCCCTCTTCTTCCTACCTATTCCAAACCCAGACCCTAATAGGCTTTGAGCAGCAACCCGGTTCTGTTCTCGGGCTCAACCACCTAAGCCCGTTTCAGGTTTCTCAGATCCAGGCTCAGATGCAGGCTCATAGCCAGACCTCCCTCTCCCTCAACTTCCTCGGCCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGACCTCCGAAGCCCACCAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAGAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTCAAGGGGTCTTGCCTCGGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGGCATCATCCAAGAAGTCAAAAGCAGCTCGGAATCCGAACCAGGATCCCAACCCGAACCTTGTTTGCAAGGCCGAGCCCGAGCTTGAACTTGAACCCGAAGCCGAACCTGTTCTGTCTCCTGAAAGTGATGGTTCTGTGGATTCTTCTCCGCTATCTGATCTCACCTTTGATGTCAGCGAGCCGCAATGGGGAGATGCTTCTGCGTATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA 990 0.5374 MAATMDLYNGQPQVQSDPFRGELMEVLEPFMKSPSSTPSLSSDSALPSTSTSTSYSYSPSPLSLPPHPSFYSDPSSSYLFQTQTLIGFEQQPGSVLGLNHLSPFQVSQIQAQMQAHSQTSLSLNFLGPKPVAMKQVGGPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCLGEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARASSKKSKAARNPNQDPNPNLVCKAEPELELEPEAEPVLSPESDGSVDSSPLSDLTFDVSEPQWGDASAYFNLQKFPSYEIDWDSL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01823 329 MobiDBLite consensus disorder prediction 235 301 - -
Vimu1g01823 329 FunFam Ethylene-responsive transcription factor 2 144 203 - -
Vimu1g01823 329 ProSiteProfiles AP2/ERF domain profile. 145 202 IPR001471 GO:0003700|GO:0006355
Vimu1g01823 329 MobiDBLite consensus disorder prediction 286 300 - -
Vimu1g01823 329 MobiDBLite consensus disorder prediction 32 60 - -
Vimu1g01823 329 Gene3D AP2/ERF domain 145 203 IPR036955 GO:0003700|GO:0006355
Vimu1g01823 329 SMART rav1_2 145 208 IPR001471 GO:0003700|GO:0006355
Vimu1g01823 329 CDD AP2 144 204 IPR001471 GO:0003700|GO:0006355
Vimu1g01823 329 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
Vimu1g01823 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 329 - -
Vimu1g01823 329 MobiDBLite consensus disorder prediction 1 60 - -
Vimu1g01823 329 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Vimu1g01823 329 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Vimu1g01823 329 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01823 Vimu-Chr1 21631381 21634850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01823 1 329 AP2-EREBP Transcription Factor Family AT1G78080 50.000 1.02e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g01823 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01823 K09286 - gmx:100802961 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01823 1 21631381 21634850 Vimu10g02541 10 36695826 36696887 PCT