Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01797 ATGTCCTCAATGGGTGGTTCAGCTGATGAAAATCTTGAAACAAAAGAGACACATGTGAGAAGTTTGTCATCTTCACATGGTCAGGAACCATATGTCCACAAGGTTGGAATTCCTCCGCGGCAAAACCTTTTCAGGGAATTCCAATCCACTGTAAAAGAAACATTTTTCGCAGATGATCCACTACGGTCGTTCAAGGATCAAACTAAGTCCCGGAAGCTGATCCTTGGCATTGAAGCCATATTCCCCATACTTAGTTGGGGGCGAACCTATAATCTCGCAAAACTTAGAGGGGATCTTATTGCTGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATATGCAAAGCTTGCAAATTTAGATCCAGAGTACGGATTATACTCCAGCTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGTTCTCGTGACATTGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACATTACTTCAGAGTGAGATTGATCCTATTGCTAACCCAATAGACTATCGAAGACTTGCTTTTACTGCCACTTTCTTTGCGGGGATTACTCAAGCAACACTTGGGGTTTTAAGATTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTTGGCTTTATGGGGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAGGGCTTCCTTGGGATTCAGAAGTTCACAAAGAAAACTGATGTTATCTCTGTGATGTACTCAGTTCTGTCATCAGCCCATCATGGTTGGAATTGGCAAACTATAGTAATTGGAGCTGTTTTTCTGGCTTTTCTTCTGTTTGCCAAGTATATTGGAAAGAAGAACACGAGATTCTTCTGGGTGCCAGCAATTGCCCCGTTGATATCTGTTATTCTCTCTACTCTTTTTGTATACTTAACACGTGCAGACAAGCATGGTGTTGCAATTGTAAAACACATAAAGAGTGGCATCAATCCTTCATCTGTGAAGGAAATTTATTTCACTGGTGATTACCTTGGGAAAGGTTTCAGAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCTACAGCAATTGGAAGAACATTTGCTTCCATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTGGGTGCTATGAATGTTGTTGGTTCATTCACTTCCTGTTATGTGGCAACCGGTTCTTTCTCTAGGTCAGCAGTAAACTACATGGCTGGCTGCGAAACTGCAGTATCTAATATCGTCATGTCTGTTGTTGTGTTTTTAACCTTGGAATTCCTCACACCTCTTTTCGAATACACTCCAAATGCCATTCTTGCTACAATCATTATTTCTGCTGTCATCAACCTTGTGGACTATAAAGCAGCGATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGGGTTGTTTTTGCCTCAGTTGAGATAGGACTTTTAATTGCAGTCTCTATATCCTTTGCAAAGATCCTATTACAAGTTACTAGGCCACGAACAGCAATTCTGGGGAAGATCCCTAGGACTACGGTCTATAGAAACATCCAACAATACCCTGAAGCCACAAGGGTTCCTGGTGTACTCATCATCAGAGTTGATTCTGCAATATATTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGCTGATGGACGAGGAAGAACAAGTGAAAGTAGACTACCAAACAAGAATCCAATTTTTGATGGTAGAGATGTCACCTGTCACTGACATAGACACAAGCGGCATCCATGCACTTGAAGAATTATTTAGAAGTCTTCAGAAAAGAGATGTTCAGGTAATCATCAAACCATCTACTGTAACAATTCTAAATGATATCATGTGGCAAATATCTTACCAAAGAAAGCACAACTTTGAGCAGCTTGTTCTGGCAAACCCTGGGCCAATAGTAATAGACAAGCTACACACATCAAACTTTGCTGCTTTGCTTGGTGAAGACAAGATCTTCCTCACTGTTGCAGAGGCTGTTGCATACTGTTCTCCAAAGTTGGCTGAGGACCCTTGA 2061 0.4129 MSSMGGSADENLETKETHVRSLSSSHGQEPYVHKVGIPPRQNLFREFQSTVKETFFADDPLRSFKDQTKSRKLILGIEAIFPILSWGRTYNLAKLRGDLIAGLTIASLCIPQDIGYAKLANLDPEYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQSEIDPIANPIDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDVISVMYSVLSSAHHGWNWQTIVIGAVFLAFLLFAKYIGKKNTRFFWVPAIAPLISVILSTLFVYLTRADKHGVAIVKHIKSGINPSSVKEIYFTGDYLGKGFRIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSFTSCYVATGSFSRSAVNYMAGCETAVSNIVMSVVVFLTLEFLTPLFEYTPNAILATIIISAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEEQVKVDYQTRIQFLMVEMSPVTDIDTSGIHALEELFRSLQKRDVQVIIKPSTVTILNDIMWQISYQRKHNFEQLVLANPGPIVIDKLHTSNFAALLGEDKIFLTVAEAVAYCSPKLAEDP 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01797 686 CDD STAS_SulP_like_sulfate_transporter 528 671 - -
Vimu1g01797 686 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g01797 686 SUPERFAMILY SpoIIaa-like 529 615 IPR036513 -
Vimu1g01797 686 ProSiteProfiles STAS domain profile. 527 678 IPR002645 -
Vimu1g01797 686 FunFam Sulfate transporter 31 507 629 - -
Vimu1g01797 686 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Vimu1g01797 686 NCBIfam sulfate permease 82 620 IPR001902 GO:0016020|GO:0055085
Vimu1g01797 686 Gene3D STAS domain 507 682 IPR036513 -
Vimu1g01797 686 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020
Vimu1g01797 686 Pfam STAS domain 528 614 IPR002645 -
Vimu1g01797 686 PANTHER SULFATE TRANSPORTER 41 679 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01797 Vimu-Chr1 20328292 20334053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01797 1 685 Inorganic Solute Cotransporters AT1G22150 73.139 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01797 K17470 - gmx:100797668 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01797 1 20328292 20334053 Vimu10g02561 10 36911359 36915257 PCT