Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01794 TTGAAGCTTCCAAGTTCCAATATGAGAGAACAAGCAGTCTTTCATCTTGAGGAACATGGTCAGACAGAGAGGTCCCAATGGGTGCTTGATTCTCCCAATCCACCCCCTCTTTGGAAAAAGATATTTACTTCTGTCAAAGAAACTATTCTGCCTCATGGGAACAAATTCTGCTTCTCATCCAAGAGGAAAACTTCCCGTGGACGTGCTTTCTCATGCTTGCAGAATCTGTTCCCTATCATTACTTGGTTAAGAGATTACAAAGCCTCCAAGTTCAAAGATGATCTCTTGGCTGGCTTAACTCTTGCCAGCCTCAGCATACCTCAGAGCATAGGGTATGCTACGTTAGCAAAAGTTGCTCCTGAATATGGCCTGTATACTAGTGTTATTCCTCCTCTTATTTATGCTCTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTGGCTGTGGTGTCAATGCTGTTATCTTCTCTGGTTCCAAAAGTGGAAGATCCTGTTGCCAATCCTAATGCCTACAGAAATCTTGTCTTTACTGTGACTTTCTTCACTGGAATTTTCCAAACTGCATTTGGTGTTTTCAGTCACTTCACCTCCAAAACAGATGTAGTATCAGTGTTGGCATCTGTTTATAAGTCACTACATCATCAAATTGCCTCAGGAGAAAAATGGAATCCTCTGAATTTTGTCCTCGGATGTTCATTCTTGATTTTCATTCTAATTACCCGTTTTATTGGCAGAAGAAACAGAAAGTTTTTCTGGTTACCTGCTGTTGCTCCCCTTCTATCAGTTATACTATCAACTTCGATCGTATATTTGTCTAGAGCTGATAAGCATGGTGTTAATATAATAAAGCATGTTAAAGGAGGTCTGAATCCAAGTTCACTGCACCAGTTGCAACTCCATGGTCCACATGTTGGACAAGCAGCTAAAATTGGTTTAATTTGTGCAGTTATAGCACTGACTGAAGCTATAGCGGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGGAACAAGGAAATGTTATCAATGGGTTTCATGAACATTGCTGGATCCTTGACTTCATGCTATGTAGCAACGGGTTCTTTCTCAAGAACTGCAGTGAATTTTAGTGCTGGATGTCAAACAGCAGTGTCAAATATTGTGATGGCTGTTACAGTGTTTTTGTCCCTGGAATTGTTTACAAGGCTCTTATACTACACCCCTGTGGCTATCCTTGCCTCTATCATTCTCTCTGCTCTTCCTGGATTAATTGACCTAAGTGAGGCTTGCTATATTTGGAAGGTTGACAAATTGGACTTTCTTGCCTGTATTGGTGCATTTCTCGGGGTCTTGTTTGCAACAGTAGAGATTGGCCTTCTTGTTGCAGTGATAATTTCGTTTGCAAAGATACTGATTCAATCAATTCGACCGGGAATAGAAGTTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTACTCAATATCCCATGGCCATAAGCACTCCAGGAATCACAGTGATTCGCATAAGTTCTGGCTCACTCTGCTTTGCAAATGCTAATTTTTGGGTTTCTCAAGATGAAGATGACCCTAAAGAAGCCACCAAGGGTCGAGTCCAAGCAGTAATTCTGGACATGACAAACCTGATGAATGTTGATACTTCTGGAATTCTAGCACTTGAGGAACTGCACAAGAGGTTGCTTTCCCGAGGAGTAGAATTAGCTATGGTGAACCCAAGGTGGCTAGTAATCCACAAGCTTAAGCTGGCACACTTTGTAGACAAGATTGGAAAAGAATGGGTTTTCCTTACTGTCGGAGAAGCCGTAGATGCATGCCTTTCTGCCAAAATTGCAAGAGCTTGA 1857 0.4179 MKLPSSNMREQAVFHLEEHGQTERSQWVLDSPNPPPLWKKIFTSVKETILPHGNKFCFSSKRKTSRGRAFSCLQNLFPIITWLRDYKASKFKDDLLAGLTLASLSIPQSIGYATLAKVAPEYGLYTSVIPPLIYALMGSSREIAIGPVAVVSMLLSSLVPKVEDPVANPNAYRNLVFTVTFFTGIFQTAFGVFSHFTSKTDVVSVLASVYKSLHHQIASGEKWNPLNFVLGCSFLIFILITRFIGRRNRKFFWLPAVAPLLSVILSTSIVYLSRADKHGVNIIKHVKGGLNPSSLHQLQLHGPHVGQAAKIGLICAVIALTEAIAVGRSFASIKGYHLDGNKEMLSMGFMNIAGSLTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVFLSLELFTRLLYYTPVAILASIILSALPGLIDLSEACYIWKVDKLDFLACIGAFLGVLFATVEIGLLVAVIISFAKILIQSIRPGIEVLGRVPRTEAFCDVTQYPMAISTPGITVIRISSGSLCFANANFWVSQDEDDPKEATKGRVQAVILDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDKIGKEWVFLTVGEAVDACLSAKIARA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01794 618 Pfam STAS domain 494 606 IPR002645 -
Vimu1g01794 618 PANTHER SULFATE TRANSPORTER 195 611 IPR001902 GO:0016020|GO:0055085
Vimu1g01794 618 SUPERFAMILY SpoIIaa-like 500 610 IPR036513 -
Vimu1g01794 618 Gene3D STAS domain 473 613 IPR036513 -
Vimu1g01794 618 FunFam Sulfate transporter 31 473 613 - -
Vimu1g01794 618 Pfam Sulfate permease family 91 193 IPR011547 GO:0016020
Vimu1g01794 618 Pfam Sulfate permease family 196 441 IPR011547 GO:0016020
Vimu1g01794 618 CDD STAS_SulP_like_sulfate_transporter 494 603 - -
Vimu1g01794 618 ProSiteProfiles STAS domain profile. 510 610 IPR002645 -
Vimu1g01794 618 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Vimu1g01794 618 NCBIfam sulfate permease 194 606 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01794 Vimu-Chr1 20236302 20240039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01794 19 615 Inorganic Solute Cotransporters AT5G10180 57.944 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01794 K17469 - gmx:100776591 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01794 1 20236302 20240039 Vimu10g02562 10 36948598 36952482 PCT