Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01789 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAATCCCGTCAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTCATCAAGAAAGCTTACGAGCTCTCAATCCTATGTGACATTGATATTGCAGTCATAATGTTTTCGCCTTCGGGTCGTGTTAACCATTTTTCTGGTCGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCAGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAACTACCATACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTAAGGACACTTCAGCAACTGAGGAATGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGACCGAAGAGCAGATAAGGTTATATGAACCCGATCCATTAAAGATGTCATCAATGGCAGATCTTGAAAACAGTGAAAAACACCTTTTAGATGTCTTGACACGAGTCATGCAGAGAAAGGAATACTTAATGAGCCACCATCTATCTTCTTTTGACCCATCCAGTATTCAGGGAATGCCAACCTCTTTCGACAATGTTGGTTGGTTGCAGGATGGAAGTCAAAATCATACTCAGATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACTTGTCTTCCACAGTGTATGGTTCATTTTCTCAAGGGACAAGTTCAAATGTTGCTGATCCACGAGGCATAGGAGAGTGTCATGTGTCAAATCCAAGTGATGGATCCCTTCAACCATGGCCTCAATGTTACACGTTGTATCCTCATCATCATATTCAACATGAAATGGTGGGACCCGACATGCCAGATATGATGCCACATGCACAGGTCAACATCCCAATCACTACCTCACGCGTGGAAGCACCCAAGAATGAACCTGTAGAATTTGATCAGTCTAAACAACAATCTCAAACTCAAACTCAAACTCATCCTCATACACATCAACATCAGCAGCTCAATGACCAATGA 1041 0.4169 MGRVKLEIKRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRNENDIALQLANPGDINSEIEELQQEVNRLQQQLQMTEEQIRLYEPDPLKMSSMADLENSEKHLLDVLTRVMQRKEYLMSHHLSSFDPSSIQGMPTSFDNVGWLQDGSQNHTQIFDASAPLDPLRDLSSTVYGSFSQGTSSNVADPRGIGECHVSNPSDGSLQPWPQCYTLYPHHHIQHEMVGPDMPDMMPHAQVNIPITTSRVEAPKNEPVEFDQSKQQSQTQTQTHPHTHQHQQLNDQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01789 346 FunFam MADS-box transcription factor 41 13 92 - -
Vimu1g01789 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 Gene3D - 15 86 IPR036879 GO:0003677|GO:0046983
Vimu1g01789 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vimu1g01789 346 Coils Coil 119 146 - -
Vimu1g01789 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 316 - -
Vimu1g01789 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vimu1g01789 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 MobiDBLite consensus disorder prediction 319 346 - -
Vimu1g01789 346 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu1g01789 346 MobiDBLite consensus disorder prediction 310 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01789 Vimu-Chr1 19960519 19969047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01789 1 312 Type I MADS-box Gene Family AT1G22130 57.367 8.27e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu1g01789 SRF-TF 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01789 - - pvu:PHAVU_008G170400g 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01789 1 19960519 19969047 Vimu1g01789 1 19960519 19969047 ECH