Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01785 ATGAAGAAGGTCACAACAATTGTTTCAATCTTTTTGATCGCGCTACTTTGTTTGCAGGAAGTCGTCCACGTATCTTCGTCACCATTCTTATATGCACGCCAGGTCTATGAGGAATCTTCTGGTGGAAGGAAACTTGAACAAGAACAGGGACAAGAACATGCCCAAGAATTGCATTGCTCCAGGGAGAGAAGTAGGGCAGCTCGGAAAGTGAAAGAGGAGTATTTGATACCATTTGTGGAACGAGAAAACTACAGGCTTTCAACTAAATGCAGACTTCACCCTGAAAATGATATATTTAGCGATCAGGAAGAGCATAAAATATTCGTAGATAGACATGAATGGCAGTGTGGATATTGTAAGAAAAGTTTTCGGGAAGAGAAATTTCTCGATCAGCATTTTGATAACAGACACTACAATCTTCTGAATGTGAGTCATGGTAAATGCTTGGCTGATTTATGTGGTGCGATGCATTGTGATGCTGTGACGAAATTCAGATCCCCCAGAAGCAAGTGTAATCTGGCAGCTGCTGCAAGAAATCGTCATCTATGTGAGAGTCTTGCTGACAATTGTTTTCCTATAAGTGATGGTCCAGCAGCAGGCCGCCTTCATGAATTGTTTCTGCACCAATTTTGTGATGCTCACACTTGCTCAGGGAAACATAAACCCTTCTCACGAGGAGGCAAGATTCTAATGTCAAAATTTGCAGTCACGGAGTACCTTTCCCTTTCTACTGGAAAGGATCAAAGTAGTTTCTTCCGCCTGGCTGCTGGAGCATTGATCTTGGTGCTACTTCCTGTGTTCTATCTTTTTCTTTATTTGATACAAAGTGATGTGAAGAATCGAACACAAGAGCTTCGTCGCATTCCAAAAGCTGGATGGAAAACAAAACCATCATGA 897 0.4192 MKKVTTIVSIFLIALLCLQEVVHVSSSPFLYARQVYEESSGGRKLEQEQGQEHAQELHCSRERSRAARKVKEEYLIPFVERENYRLSTKCRLHPENDIFSDQEEHKIFVDRHEWQCGYCKKSFREEKFLDQHFDNRHYNLLNVSHGKCLADLCGAMHCDAVTKFRSPRSKCNLAAAARNRHLCESLADNCFPISDGPAAGRLHELFLHQFCDAHTCSGKHKPFSRGGKILMSKFAVTEYLSLSTGKDQSSFFRLAAGALILVLLPVFYLFLYLIQSDVKNRTQELRRIPKAGWKTKPS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01785 298 ProSitePatterns Zinc finger C2H2 type domain signature. 116 137 IPR013087 -
Vimu1g01785 298 PANTHER ZINC FINGER PROTEIN-RELATED 7 297 - -
Vimu1g01785 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 137 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01785 Vimu-Chr1 19909381 19915769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01785 34 298 C2H2 Transcription Factor Family AT5G63280 56.226 2.71e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g01785 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01785 - - gmx:100780668 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01785 1 19909381 19915769 Vimu1g01785 1 19909381 19915769 ECH