Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01765 ATGGCTAGAAGGATTATGGGTTTTTCTCCTAATAGAGGGCAGGGTCCACAGTACCCACCTATGGTTAGACAAAGGTCTTTCTACAACCTCAGTTTTTTTGAGGATGTTGAGAGACCGTTGTTGGGAAACACAGGGAATGAAAGTGCATATCTTGTGCAAGACCCTTCATGTGATCATCATTCATTTACCAAAACCAGTGGCATTGGTGAGGCTTTGAGGGGAATTGTTGACCATGAACACATGAACAGGTCGGTAGAAACCCTCTTGCATGAACCTACTTTAGGGGAATCAACTTTAGAACATTTCCTAGCTAATGCAGGTGTGATCAATGTAGCTGATCAGAATGCCAACGTTCACACTCTGCCACCAATGGTGATTGATTCAATACATCAACAACATTGGTTGCAAATTCCTTCTGTTAGCACCCACCAACCTCATCATCATCATCATGATCAGTCACAGATAATTGGAAACTCTCAAGATTTCAGTGTTTCTAATAACTCATTCTACGATAGCCAACTTAGTTATTCAGAAAACTCAGCGGGGATTCCAATGTCTCCTTCCTATTCAGATTCTTCTAAGACCTCTCTTTTTAGGAAGAGAAAGCACTCAAATGATGAGATGCTGGAAAAGGCTGTAGAGAGAAGACAAAAGAGGATGGCTAAGAACAGGGAATCTGCAGCAAGATCTAGGGCAAAGAAGCAGGAACACATACATAGATTAGAGAACGAGAAGTGTCGCCTTCAGAAAGTGAATTCCTGGCTCAAAAAGCTGAAGGTACATTCAGCAATCCATTTTCAACTGAAAATAGTTTTGTTTTGTATGTATGTGTTGTGCTAA 840 0.4107 MARRIMGFSPNRGQGPQYPPMVRQRSFYNLSFFEDVERPLLGNTGNESAYLVQDPSCDHHSFTKTSGIGEALRGIVDHEHMNRSVETLLHEPTLGESTLEHFLANAGVINVADQNANVHTLPPMVIDSIHQQHWLQIPSVSTHQPHHHHHDQSQIIGNSQDFSVSNNSFYDSQLSYSENSAGIPMSPSYSDSSKTSLFRKRKHSNDEMLEKAVERRQKRMAKNRESAARSRAKKQEHIHRLENEKCRLQKVNSWLKKLKVHSAIHFQLKIVLFCMYVLC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01765 279 SUPERFAMILY Leucine zipper domain 215 257 IPR046347 GO:0003700|GO:0006355
Vimu1g01765 279 Pfam bZIP transcription factor 215 257 IPR004827 GO:0003700|GO:0006355
Vimu1g01765 279 MobiDBLite consensus disorder prediction 1 20 - -
Vimu1g01765 279 Coils Coil 224 244 - -
Vimu1g01765 279 CDD bZIP_plant_BZIP46 215 260 - -
Vimu1g01765 279 MobiDBLite consensus disorder prediction 218 238 - -
Vimu1g01765 279 SMART brlzneu 211 274 IPR004827 GO:0003700|GO:0006355
Vimu1g01765 279 MobiDBLite consensus disorder prediction 181 206 - -
Vimu1g01765 279 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 213 257 IPR004827 GO:0003700|GO:0006355
Vimu1g01765 279 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 72 258 IPR043452 GO:0003700|GO:0045893
Vimu1g01765 279 Gene3D - 213 262 - -
Vimu1g01765 279 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 218 233 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01765 Vimu-Chr1 19053164 19054090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01765 91 260 bZIP Transcription Factor Family AT2G41070 35.465 7.56e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g01765 bZIP_1 1.8e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01765 K14432 - gmx:100808654 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01765 1 19053164 19054090 Vimu1g01765 1 19053164 19054090 ECH